miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 2702 0.66 0.628764
Target:  5'- nGGCuGCcGCCGCCa-GCCGcCCAGGGg -3'
miRNA:   3'- -CUGuUGcCGGCGGacCGGU-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 50682 0.72 0.286616
Target:  5'- cGCGGCGGCCacgcgcGCCauucUGGCCGCCGGGc- -3'
miRNA:   3'- cUGUUGCCGG------CGG----ACCGGUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 2662 0.72 0.289219
Target:  5'- gGGCGGCGGCCGCggGcGCCGCCguguggcugggccccGGGGg -3'
miRNA:   3'- -CUGUUGCCGGCGgaC-CGGUGG---------------UCCCa -5'
5606 3' -62.4 NC_001806.1 + 53862 0.72 0.290527
Target:  5'- cGACGGCGGCCagcuguuuggcaGCCgcgcggggaucagGGUCGCCGGGGc -3'
miRNA:   3'- -CUGUUGCCGG------------CGGa------------CCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 29972 0.72 0.299815
Target:  5'- cGCGGgGGgCGUCUGGCCccuCCGGGGg -3'
miRNA:   3'- cUGUUgCCgGCGGACCGGu--GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 24790 0.71 0.305906
Target:  5'- cGACGACGGCCcgggggcccugccGCCgGcGCCGCCcGGGa -3'
miRNA:   3'- -CUGUUGCCGG-------------CGGaC-CGGUGGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 34399 0.71 0.306588
Target:  5'- gGGCGGCGGUgGCCgGGCCggGCCGGGc- -3'
miRNA:   3'- -CUGUUGCCGgCGGaCCGG--UGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 5093 0.71 0.313478
Target:  5'- gGGCGGCGGcCCGUCgguggGGCCcggggaGCCGGGGc -3'
miRNA:   3'- -CUGUUGCC-GGCGGa----CCGG------UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 9173 0.71 0.313478
Target:  5'- aGACAACGGCCGUgUaGCC-CgGGGGUc -3'
miRNA:   3'- -CUGUUGCCGGCGgAcCGGuGgUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 88066 0.72 0.280191
Target:  5'- cGugGGCaGGCC-CCUGGCCGCCAGcucguucaGGUg -3'
miRNA:   3'- -CugUUG-CCGGcGGACCGGUGGUC--------CCA- -5'
5606 3' -62.4 NC_001806.1 + 120864 0.72 0.27388
Target:  5'- cGGCGGCcccuggcGCCGCCUGGuCCcCCGGGGa -3'
miRNA:   3'- -CUGUUGc------CGGCGGACC-GGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 23060 0.72 0.267684
Target:  5'- cGGCAGCgaGGCCGCCgUGGCCGCCGu--- -3'
miRNA:   3'- -CUGUUG--CCGGCGG-ACCGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 58332 0.79 0.098202
Target:  5'- uGGCGuugGCGGCCGCCUGGCcCGCCuuGGUg -3'
miRNA:   3'- -CUGU---UGCCGGCGGACCG-GUGGucCCA- -5'
5606 3' -62.4 NC_001806.1 + 92898 0.77 0.139855
Target:  5'- aGGCuGCGGCCGCgUGGuCCGCgCAGGGc -3'
miRNA:   3'- -CUGuUGCCGGCGgACC-GGUG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 30738 0.76 0.146991
Target:  5'- cGCGGgGGCCGCCUcuuccGCCGCCGGGGc -3'
miRNA:   3'- cUGUUgCCGGCGGAc----CGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 50255 0.75 0.183355
Target:  5'- ----cCGGCCGCaugacguacCUGGCCACCGGGGc -3'
miRNA:   3'- cuguuGCCGGCG---------GACCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 103022 0.75 0.197144
Target:  5'- cGGCGGCGGCCGCCgccgucuccaGcGCCuCCAGGGc -3'
miRNA:   3'- -CUGUUGCCGGCGGa---------C-CGGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 22107 0.74 0.216931
Target:  5'- gGGCGACaGCCGCCcgGGCCuCUGGGGg -3'
miRNA:   3'- -CUGUUGcCGGCGGa-CCGGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 22452 0.73 0.244028
Target:  5'- cGCGGCGGCCGCCgUGGCCAUgAGc-- -3'
miRNA:   3'- cUGUUGCCGGCGG-ACCGGUGgUCcca -5'
5606 3' -62.4 NC_001806.1 + 61431 0.73 0.249774
Target:  5'- -uCGAUGGCCGCCaGcGCCGCCGGGc- -3'
miRNA:   3'- cuGUUGCCGGCGGaC-CGGUGGUCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.