Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5606 | 3' | -62.4 | NC_001806.1 | + | 49955 | 0.66 | 0.578462 |
Target: 5'- uGGCGGauGCCGUcgugcggCUGGCCAUCAacGGGUg -3' miRNA: 3'- -CUGUUgcCGGCG-------GACCGGUGGU--CCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 95502 | 0.66 | 0.573567 |
Target: 5'- cGACGGCGGCuguacgcggacCGCCugacgaagcggucguUGGCCAgCCuGGGg -3' miRNA: 3'- -CUGUUGCCG-----------GCGG---------------ACCGGU-GGuCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 22790 | 0.66 | 0.573567 |
Target: 5'- aGGC--CGGCCgcguggccgucgaguGCCUGGCCGCCugccgcGGGa -3' miRNA: 3'- -CUGuuGCCGG---------------CGGACCGGUGGu-----CCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 22183 | 0.66 | 0.569658 |
Target: 5'- -cCGGCGGCCGUgUGGgCGCCcgagcuGGGc -3' miRNA: 3'- cuGUUGCCGGCGgACCgGUGGu-----CCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 54657 | 0.66 | 0.569658 |
Target: 5'- -gUAACGGCCGaCUUaGCCGCCggugaGGGGUc -3' miRNA: 3'- cuGUUGCCGGC-GGAcCGGUGG-----UCCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 74599 | 0.66 | 0.569658 |
Target: 5'- cGACGACGGCgGgCU-GUCGCCAGaGGc -3' miRNA: 3'- -CUGUUGCCGgCgGAcCGGUGGUC-CCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 3834 | 0.67 | 0.559916 |
Target: 5'- aGCGGcCGGCCGCCaUGGCguaGCCcagguGGGg -3' miRNA: 3'- cUGUU-GCCGGCGG-ACCGg--UGGu----CCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 65675 | 0.67 | 0.559916 |
Target: 5'- cGCuGgGGCCGCC-GGCCuccugucccccaACCGGGGc -3' miRNA: 3'- cUGuUgCCGGCGGaCCGG------------UGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 4351 | 0.67 | 0.55022 |
Target: 5'- cGGCGcucgauGCGGcCCGCggaGGCCGCgGGGGUc -3' miRNA: 3'- -CUGU------UGCC-GGCGga-CCGGUGgUCCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 32983 | 0.67 | 0.55022 |
Target: 5'- cGCcGgGGCCccggGCCgGGCCGCCAcGGGg -3' miRNA: 3'- cUGuUgCCGG----CGGaCCGGUGGU-CCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 79749 | 0.67 | 0.547321 |
Target: 5'- --uGGCGGCCGCCUgcccuccccgacacGGUCGCCccGGUu -3' miRNA: 3'- cugUUGCCGGCGGA--------------CCGGUGGucCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 151532 | 0.67 | 0.540577 |
Target: 5'- gGACGGCGcCCguggGCCcgGGCgGCCGGGGg -3' miRNA: 3'- -CUGUUGCcGG----CGGa-CCGgUGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 3639 | 0.67 | 0.537695 |
Target: 5'- cGGCGACGGCgGCgacccccucgucauCUGcGCCggcGCCGGGGc -3' miRNA: 3'- -CUGUUGCCGgCG--------------GAC-CGG---UGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 71687 | 0.67 | 0.530991 |
Target: 5'- cAUAAacaGGCCGggucUCUGGCCAgCAGGGc -3' miRNA: 3'- cUGUUg--CCGGC----GGACCGGUgGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 9983 | 0.67 | 0.530991 |
Target: 5'- uGACGGaGGCCGCCUGccacGCCAgccCCGGGa- -3' miRNA: 3'- -CUGUUgCCGGCGGAC----CGGU---GGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 3799 | 0.67 | 0.521467 |
Target: 5'- cACGGCGGCCGCCgcgugCGCCAGGc- -3' miRNA: 3'- cUGUUGCCGGCGGaccg-GUGGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 26399 | 0.67 | 0.521467 |
Target: 5'- cGCGGCccccGCCGCCcccGGCCGCCcGGGc -3' miRNA: 3'- cUGUUGc---CGGCGGa--CCGGUGGuCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 3384 | 0.67 | 0.521467 |
Target: 5'- --gGACGGCCGCCaGGUCGCCGu--- -3' miRNA: 3'- cugUUGCCGGCGGaCCGGUGGUccca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 41360 | 0.67 | 0.521467 |
Target: 5'- ----cCGGCauCCaGGCCGCCAGGGg -3' miRNA: 3'- cuguuGCCGgcGGaCCGGUGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 33778 | 0.67 | 0.512011 |
Target: 5'- uGCGGCGGCCGCCguguucGGUCucgguagccgGCCGgcGGGUg -3' miRNA: 3'- cUGUUGCCGGCGGa-----CCGG----------UGGU--CCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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