miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 5' -56.2 NC_001806.1 + 112270 1.09 0.002816
Target:  5'- gCGACCCUGGUCGCCGAGCUAAAGCGAa -3'
miRNA:   3'- -GCUGGGACCAGCGGCUCGAUUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 52762 0.79 0.268171
Target:  5'- aCGACCC-GGUCGCCGAGCcccccgcuGCGGc -3'
miRNA:   3'- -GCUGGGaCCAGCGGCUCGauuu----CGCU- -5'
5606 5' -56.2 NC_001806.1 + 23095 0.75 0.458572
Target:  5'- uGAgCCUGGUCGCCGGggcccugggccccgcGCUGccGCGGg -3'
miRNA:   3'- gCUgGGACCAGCGGCU---------------CGAUuuCGCU- -5'
5606 5' -56.2 NC_001806.1 + 73108 0.74 0.480921
Target:  5'- cCGACCCggccgggccgccGGUCGCCGAgGCg--GGCGAg -3'
miRNA:   3'- -GCUGGGa-----------CCAGCGGCU-CGauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 50031 0.74 0.492293
Target:  5'- uGACCUggacgacaGGgcgGCCGAGCUGAGGCGGc -3'
miRNA:   3'- gCUGGGa-------CCag-CGGCUCGAUUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 151316 0.73 0.540905
Target:  5'- gGGCCuCUGG-CGCCG-GCUcgGGCGGg -3'
miRNA:   3'- gCUGG-GACCaGCGGCuCGAuuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 130493 0.73 0.550831
Target:  5'- cCGGCCCaGGcCGCCGAGaCggagGAGGUGGg -3'
miRNA:   3'- -GCUGGGaCCaGCGGCUC-Ga---UUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 109404 0.72 0.57084
Target:  5'- cCGACCCggcgaugGGUCGUgGGGCgc-GGCGGc -3'
miRNA:   3'- -GCUGGGa------CCAGCGgCUCGauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 33979 0.72 0.57084
Target:  5'- gCGGgCCgggGGUCGCCGgGGCaGGGGCGGg -3'
miRNA:   3'- -GCUgGGa--CCAGCGGC-UCGaUUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 76321 0.72 0.59102
Target:  5'- aCGACCCggcggcGGcCGCCGAGCUuguccGGGCa- -3'
miRNA:   3'- -GCUGGGa-----CCaGCGGCUCGAu----UUCGcu -5'
5606 5' -56.2 NC_001806.1 + 27083 0.72 0.59102
Target:  5'- gGGCCCUGGccCGCgGAGCcGGcccGGCGAa -3'
miRNA:   3'- gCUGGGACCa-GCGgCUCGaUU---UCGCU- -5'
5606 5' -56.2 NC_001806.1 + 2790 0.71 0.63168
Target:  5'- gCGGCCCgGGgCGCCGcgGGCU-GGGCGGg -3'
miRNA:   3'- -GCUGGGaCCaGCGGC--UCGAuUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 2077 0.71 0.652041
Target:  5'- uGAgCCgccGGUCGCCGGcGCU--GGCGAg -3'
miRNA:   3'- gCUgGGa--CCAGCGGCU-CGAuuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 113855 0.71 0.656108
Target:  5'- gCGGCCCUGGaccgccaucgcgacUGCCGGGUUAgcGCGGg -3'
miRNA:   3'- -GCUGGGACCa-------------GCGGCUCGAUuuCGCU- -5'
5606 5' -56.2 NC_001806.1 + 107133 0.71 0.662203
Target:  5'- -aGCaCCUGGUgGCCGAGauuCUGGAGCGc -3'
miRNA:   3'- gcUG-GGACCAgCGGCUC---GAUUUCGCu -5'
5606 5' -56.2 NC_001806.1 + 58068 0.71 0.662203
Target:  5'- aGGCCCgGGagGCCGAGCUcccGGCuGAa -3'
miRNA:   3'- gCUGGGaCCagCGGCUCGAuu-UCG-CU- -5'
5606 5' -56.2 NC_001806.1 + 28594 0.7 0.712478
Target:  5'- gGACCggGGUCGCCGuGUUGGGGgCGu -3'
miRNA:   3'- gCUGGgaCCAGCGGCuCGAUUUC-GCu -5'
5606 5' -56.2 NC_001806.1 + 121349 0.69 0.751531
Target:  5'- gGAgCCagUGGUCGgCGAGCUGGauGGCGc -3'
miRNA:   3'- gCUgGG--ACCAGCgGCUCGAUU--UCGCu -5'
5606 5' -56.2 NC_001806.1 + 74531 0.69 0.77976
Target:  5'- gCGGCCCUGG--GCCaGcAGCUGGacAGCGAc -3'
miRNA:   3'- -GCUGGGACCagCGG-C-UCGAUU--UCGCU- -5'
5606 5' -56.2 NC_001806.1 + 137643 0.69 0.788919
Target:  5'- gGACCCUGGgguugGCCGAGggcgccCUGAcGCGGu -3'
miRNA:   3'- gCUGGGACCag---CGGCUC------GAUUuCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.