miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 5' -56.2 NC_001806.1 + 2077 0.71 0.652041
Target:  5'- uGAgCCgccGGUCGCCGGcGCU--GGCGAg -3'
miRNA:   3'- gCUgGGa--CCAGCGGCU-CGAuuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 2790 0.71 0.63168
Target:  5'- gCGGCCCgGGgCGCCGcgGGCU-GGGCGGg -3'
miRNA:   3'- -GCUGGGaCCaGCGGC--UCGAuUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 4279 0.67 0.878681
Target:  5'- uCGACCCgccggGGcUGCCcGGCcgUGAAGCGGc -3'
miRNA:   3'- -GCUGGGa----CCaGCGGcUCG--AUUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 4751 0.68 0.80681
Target:  5'- gGGCCC-GGUCGCCG-GC---GGCGu -3'
miRNA:   3'- gCUGGGaCCAGCGGCuCGauuUCGCu -5'
5606 5' -56.2 NC_001806.1 + 6071 0.66 0.885657
Target:  5'- cCGGCCCcGGgggCGggcCCGGGCggcggGGGGCGGg -3'
miRNA:   3'- -GCUGGGaCCa--GC---GGCUCGa----UUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 9188 0.66 0.911303
Target:  5'- -aGCCCgggGGUCG-CGGGUgu-GGCGAg -3'
miRNA:   3'- gcUGGGa--CCAGCgGCUCGauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 10681 0.66 0.905236
Target:  5'- aGACCCccGGUCGCagaugGGGCcgggGGGGCGu -3'
miRNA:   3'- gCUGGGa-CCAGCGg----CUCGa---UUUCGCu -5'
5606 5' -56.2 NC_001806.1 + 22057 0.66 0.892411
Target:  5'- uGGCCC-GG-CGCCGGGCccccgcccccGGGGCGGg -3'
miRNA:   3'- gCUGGGaCCaGCGGCUCGa---------UUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 22186 0.68 0.832451
Target:  5'- gCGGCCgUGuGggCGcCCGAGCU-GGGCGAc -3'
miRNA:   3'- -GCUGGgAC-Ca-GC-GGCUCGAuUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 23095 0.75 0.458572
Target:  5'- uGAgCCUGGUCGCCGGggcccugggccccgcGCUGccGCGGg -3'
miRNA:   3'- gCUgGGACCAGCGGCU---------------CGAUuuCGCU- -5'
5606 5' -56.2 NC_001806.1 + 23698 0.67 0.864082
Target:  5'- gGGCCCUGGccucgaUCGCCGcGCggu-GCGc -3'
miRNA:   3'- gCUGGGACC------AGCGGCuCGauuuCGCu -5'
5606 5' -56.2 NC_001806.1 + 23957 0.68 0.80681
Target:  5'- gGGCCgCcggagUGGUcCGCCGAGCgc-GGCGGg -3'
miRNA:   3'- gCUGG-G-----ACCA-GCGGCUCGauuUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 27083 0.72 0.59102
Target:  5'- gGGCCCUGGccCGCgGAGCcGGcccGGCGAa -3'
miRNA:   3'- gCUGGGACCa-GCGgCUCGaUU---UCGCU- -5'
5606 5' -56.2 NC_001806.1 + 28594 0.7 0.712478
Target:  5'- gGACCggGGUCGCCGuGUUGGGGgCGu -3'
miRNA:   3'- gCUGGgaCCAGCGGCuCGAUUUC-GCu -5'
5606 5' -56.2 NC_001806.1 + 29435 0.66 0.898296
Target:  5'- aGACCCgcaUGGagGCCGAGgaGgccgucaGGGCGGg -3'
miRNA:   3'- gCUGGG---ACCagCGGCUCgaU-------UUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 30410 0.66 0.885657
Target:  5'- gCGGCUCggGGggGCCGGGCguggAGGGUGGg -3'
miRNA:   3'- -GCUGGGa-CCagCGGCUCGa---UUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 33979 0.72 0.57084
Target:  5'- gCGGgCCgggGGUCGCCGgGGCaGGGGCGGg -3'
miRNA:   3'- -GCUgGGa--CCAGCGGC-UCGaUUUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 34558 0.67 0.864082
Target:  5'- gCGACCC-GGcCGCCGGG---GAGCGu -3'
miRNA:   3'- -GCUGGGaCCaGCGGCUCgauUUCGCu -5'
5606 5' -56.2 NC_001806.1 + 44397 0.66 0.892411
Target:  5'- aCGACCa-GGagGCCGcgGGCguuGAGCGAc -3'
miRNA:   3'- -GCUGGgaCCagCGGC--UCGau-UUCGCU- -5'
5606 5' -56.2 NC_001806.1 + 46390 0.66 0.905236
Target:  5'- gGACCCcccgGGUgGCCG-GCUuuaacAAGCGc -3'
miRNA:   3'- gCUGGGa---CCAgCGGCuCGAu----UUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.