miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 3' -61.5 NC_001806.1 + 79007 0.66 0.689732
Target:  5'- gGACCCCcccGGCCcC-CCCGACgUGCGGu -3'
miRNA:   3'- -CUGGGGua-CCGGcGaGGGUUG-GCGCU- -5'
5607 3' -61.5 NC_001806.1 + 107135 0.66 0.689732
Target:  5'- cACCUgGUGGCCGagauUCUgGAgCGCGAa -3'
miRNA:   3'- cUGGGgUACCGGCg---AGGgUUgGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 145979 0.66 0.689732
Target:  5'- cGACCCCcuuuUGGgCGC-CCCGucCCGCc- -3'
miRNA:   3'- -CUGGGGu---ACCgGCGaGGGUu-GGCGcu -5'
5607 3' -61.5 NC_001806.1 + 46390 0.66 0.667172
Target:  5'- gGACCCCccggGUGGCCgGCUUuaaCAagcgcgucuucugcGCCGCGGu -3'
miRNA:   3'- -CUGGGG----UACCGG-CGAGg--GU--------------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 41410 0.66 0.660274
Target:  5'- --aUCCGUGaGCCGCcugCCCAgcgcGCCGUGGu -3'
miRNA:   3'- cugGGGUAC-CGGCGa--GGGU----UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 31114 0.67 0.591137
Target:  5'- -uCCCCGgcUGGagccgccgcaccCUGCUCCCcgaGACCGCGGg -3'
miRNA:   3'- cuGGGGU--ACC------------GGCGAGGG---UUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 9735 0.67 0.610851
Target:  5'- -cCCCCAUcaCCGCcCCUAACCGCa- -3'
miRNA:   3'- cuGGGGUAccGGCGaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 79800 0.67 0.610851
Target:  5'- cGCCCCccGGCCcCUCCCAaacccccagaGCCaGCGc -3'
miRNA:   3'- cUGGGGuaCCGGcGAGGGU----------UGG-CGCu -5'
5607 3' -61.5 NC_001806.1 + 73451 0.67 0.610851
Target:  5'- cACCCaggccgggGUGGCCGg-CCCGGCCGCc- -3'
miRNA:   3'- cUGGGg-------UACCGGCgaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 32988 0.67 0.610851
Target:  5'- gGGCCCCGggccgGGCCGCcacgggggCCGGCCGUu- -3'
miRNA:   3'- -CUGGGGUa----CCGGCGag------GGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 143639 0.67 0.571535
Target:  5'- cGCCCCGUccggcGcGCCGCcCCCcGCCGCu- -3'
miRNA:   3'- cUGGGGUA-----C-CGGCGaGGGuUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 98064 0.67 0.610851
Target:  5'- cGACgUgAUGGCCGuCUCCaCGugcgugccggucGCCGCGGa -3'
miRNA:   3'- -CUGgGgUACCGGC-GAGG-GU------------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 5831 0.67 0.614803
Target:  5'- cGCCCguUGGCCGUccccgggccccccggUCCCGcCCGCc- -3'
miRNA:   3'- cUGGGguACCGGCG---------------AGGGUuGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 22179 0.67 0.591137
Target:  5'- cGCCCCGgcGGCCGUgugggcgCCCGagcugggcgacGCCGCGc -3'
miRNA:   3'- cUGGGGUa-CCGGCGa------GGGU-----------UGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 73967 0.67 0.620734
Target:  5'- gGGCCCCucggcguaAUGcCCGC-CCCGGCCGgGGc -3'
miRNA:   3'- -CUGGGG--------UACcGGCGaGGGUUGGCgCU- -5'
5607 3' -61.5 NC_001806.1 + 114067 0.67 0.620734
Target:  5'- gGugCCCGccuucucgcggGGCCGCUgCUGcACCGCGGg -3'
miRNA:   3'- -CugGGGUa----------CCGGCGAgGGU-UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 140186 0.67 0.569583
Target:  5'- uGCCCCGggacGGCCGaguuucuccagCCC-ACCGCGGa -3'
miRNA:   3'- cUGGGGUa---CCGGCga---------GGGuUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 23425 0.67 0.571535
Target:  5'- cGCCCCcgGGgcccgagcCCGCccccgCCCAGCCcGCGGc -3'
miRNA:   3'- cUGGGGuaCC--------GGCGa----GGGUUGG-CGCU- -5'
5607 3' -61.5 NC_001806.1 + 86968 0.67 0.571535
Target:  5'- cGGCCuCCucggGGCUGCUCUgGGgaauCCGCGAg -3'
miRNA:   3'- -CUGG-GGua--CCGGCGAGGgUU----GGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 108159 0.67 0.571535
Target:  5'- --gCCCGUGGCCGCaauugcgCCCGgguuucugGCCGCc- -3'
miRNA:   3'- cugGGGUACCGGCGa------GGGU--------UGGCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.