miRNA display CGI


Results 41 - 60 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 3' -61.5 NC_001806.1 + 4620 0.75 0.207949
Target:  5'- uGACgCCgAUGGCCGC-CaCCGGCCGUGAc -3'
miRNA:   3'- -CUG-GGgUACCGGCGaG-GGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 150069 0.75 0.20158
Target:  5'- -cCCCCaAUGGCCGCgcgUCCCAggggaggcaggcccACCGCGGg -3'
miRNA:   3'- cuGGGG-UACCGGCG---AGGGU--------------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 151463 0.77 0.163192
Target:  5'- cGGCCgCG-GGCgCGCUCCUGACCGCGGg -3'
miRNA:   3'- -CUGGgGUaCCG-GCGAGGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 21148 0.78 0.144224
Target:  5'- gGGCCCCAccgacgGGCCGCcgCCCAccccgagcccagACCGCGAc -3'
miRNA:   3'- -CUGGGGUa-----CCGGCGa-GGGU------------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 33341 0.79 0.115089
Target:  5'- cGCCCCuUGGCCGC-CCCGGCUGCa- -3'
miRNA:   3'- cUGGGGuACCGGCGaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 90264 0.73 0.294577
Target:  5'- cGCCCC-UGGUCGUgggCCUGACCGUGGa -3'
miRNA:   3'- cUGGGGuACCGGCGa--GGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 132133 0.73 0.297234
Target:  5'- cGACCCUAUGGCCcuggcgGCgcgcguugccgagcaUCCCGACgCGCGGc -3'
miRNA:   3'- -CUGGGGUACCGG------CG---------------AGGGUUG-GCGCU- -5'
5607 3' -61.5 NC_001806.1 + 76627 0.71 0.397768
Target:  5'- aGACCCUgcugaagGUGGUCGCcgUCCCGgcgACCGUGGc -3'
miRNA:   3'- -CUGGGG-------UACCGGCG--AGGGU---UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 147922 0.71 0.390421
Target:  5'- cGGCCCCucGGCCGC-CCCGccuCCGCu- -3'
miRNA:   3'- -CUGGGGuaCCGGCGaGGGUu--GGCGcu -5'
5607 3' -61.5 NC_001806.1 + 28154 0.71 0.390421
Target:  5'- cGGCCUgAgGGCCGCcCCCAG-CGCGAg -3'
miRNA:   3'- -CUGGGgUaCCGGCGaGGGUUgGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 22794 0.71 0.390421
Target:  5'- cGGCCgCGUGGCCGUcgagugCCUGGCCGCc- -3'
miRNA:   3'- -CUGGgGUACCGGCGa-----GGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 77966 0.71 0.387992
Target:  5'- cGGCCCCggGGCCGCcgcucggacCCCAgagcuccacuaggcACCGCGu -3'
miRNA:   3'- -CUGGGGuaCCGGCGa--------GGGU--------------UGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 16558 0.71 0.382362
Target:  5'- aAUCCCGUGGCCccaaucucaUCCCGGCUGCGu -3'
miRNA:   3'- cUGGGGUACCGGcg-------AGGGUUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 57379 0.71 0.381563
Target:  5'- cGGCCCgGUGGCUGUcguugcggagcaUCCCGcgccuugGCCGUGAu -3'
miRNA:   3'- -CUGGGgUACCGGCG------------AGGGU-------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 23068 0.71 0.374415
Target:  5'- aGGCCgCCGUGGCCGCcgUgCGcGCCGUGAg -3'
miRNA:   3'- -CUGG-GGUACCGGCGa-GgGU-UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 1457 0.71 0.366581
Target:  5'- gGGCCCCcgGGCCGUcgUCgUcGCCGCGc -3'
miRNA:   3'- -CUGGGGuaCCGGCG--AGgGuUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 107038 0.71 0.35886
Target:  5'- cGCCCgCggGGCCGCgggCUguGCCGCGGa -3'
miRNA:   3'- cUGGG-GuaCCGGCGa--GGguUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 32542 0.72 0.343763
Target:  5'- cGACCCCcUGGCgGuCUUCCAGCCGg-- -3'
miRNA:   3'- -CUGGGGuACCGgC-GAGGGUUGGCgcu -5'
5607 3' -61.5 NC_001806.1 + 57084 0.72 0.321985
Target:  5'- aGACUCCAcagaacaagGGCCGCUCCacCGGCCGCc- -3'
miRNA:   3'- -CUGGGGUa--------CCGGCGAGG--GUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 131868 0.73 0.301255
Target:  5'- aGGCCgUCGUGGCgGCcgCCCGcGCCGCGAc -3'
miRNA:   3'- -CUGG-GGUACCGgCGa-GGGU-UGGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.