miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 3' -61.5 NC_001806.1 + 57041 0.66 0.640516
Target:  5'- cGGgCCCggGGCCgggGCcCCCGGCUGCGu -3'
miRNA:   3'- -CUgGGGuaCCGG---CGaGGGUUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 43164 0.66 0.637549
Target:  5'- uGCCCCAuUGcGuCCGCgcgCCCAAgggccaguacccgcCCGCGAu -3'
miRNA:   3'- cUGGGGU-AC-C-GGCGa--GGGUU--------------GGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 91144 0.66 0.634582
Target:  5'- -uCCgCGUGGCCGCUgUucgagggccaggacaCGGCCGCGGc -3'
miRNA:   3'- cuGGgGUACCGGCGAgG---------------GUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 21510 0.66 0.630625
Target:  5'- gGGCCCCGgcccggGGCCGCgaacgggaggCCCcGCuaCGCGGc -3'
miRNA:   3'- -CUGGGGUa-----CCGGCGa---------GGGuUG--GCGCU- -5'
5607 3' -61.5 NC_001806.1 + 81419 0.66 0.630625
Target:  5'- aGACCaagguCCGUcaGcGCCGCcgCCUGACCGCGGa -3'
miRNA:   3'- -CUGG-----GGUA--C-CGGCGa-GGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 114067 0.67 0.620734
Target:  5'- gGugCCCGccuucucgcggGGCCGCUgCUGcACCGCGGg -3'
miRNA:   3'- -CugGGGUa----------CCGGCGAgGGU-UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 79704 0.67 0.620734
Target:  5'- cGCUCCcUGGCgCGCgccaCCCAGgcuuCCGCGAc -3'
miRNA:   3'- cUGGGGuACCG-GCGa---GGGUU----GGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 4280 0.67 0.620734
Target:  5'- cGACCCgCcggGGCUGC--CCGGCCGUGAa -3'
miRNA:   3'- -CUGGG-Gua-CCGGCGagGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 73967 0.67 0.620734
Target:  5'- gGGCCCCucggcguaAUGcCCGC-CCCGGCCGgGGc -3'
miRNA:   3'- -CUGGGG--------UACcGGCGaGGGUUGGCgCU- -5'
5607 3' -61.5 NC_001806.1 + 40170 0.67 0.620734
Target:  5'- cGCgCCGUGGCgCGacucgCCCGGCCGUGc -3'
miRNA:   3'- cUGgGGUACCG-GCga---GGGUUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 94975 0.67 0.618757
Target:  5'- aGACCaCCAUGGaCGCguuugccagcaaCCUGACCGCGc -3'
miRNA:   3'- -CUGG-GGUACCgGCGa-----------GGGUUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 5831 0.67 0.614803
Target:  5'- cGCCCguUGGCCGUccccgggccccccggUCCCGcCCGCc- -3'
miRNA:   3'- cUGGGguACCGGCG---------------AGGGUuGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 98064 0.67 0.610851
Target:  5'- cGACgUgAUGGCCGuCUCCaCGugcgugccggucGCCGCGGa -3'
miRNA:   3'- -CUGgGgUACCGGC-GAGG-GU------------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 32988 0.67 0.610851
Target:  5'- gGGCCCCGggccgGGCCGCcacgggggCCGGCCGUu- -3'
miRNA:   3'- -CUGGGGUa----CCGGCGag------GGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 79800 0.67 0.610851
Target:  5'- cGCCCCccGGCCcCUCCCAaacccccagaGCCaGCGc -3'
miRNA:   3'- cUGGGGuaCCGGcGAGGGU----------UGG-CGCu -5'
5607 3' -61.5 NC_001806.1 + 150963 0.67 0.610851
Target:  5'- aGCCCgGUcGGcCCGCUcgcgggCCCAcgaGCCGCGGc -3'
miRNA:   3'- cUGGGgUA-CC-GGCGA------GGGU---UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 73451 0.67 0.610851
Target:  5'- cACCCaggccgggGUGGCCGg-CCCGGCCGCc- -3'
miRNA:   3'- cUGGGg-------UACCGGCgaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 9735 0.67 0.610851
Target:  5'- -cCCCCAUcaCCGCcCCUAACCGCa- -3'
miRNA:   3'- cuGGGGUAccGGCGaGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 27462 0.67 0.600983
Target:  5'- cGGCCCC--GGCCGC-CCUucCCGCu- -3'
miRNA:   3'- -CUGGGGuaCCGGCGaGGGuuGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 41994 0.67 0.600983
Target:  5'- --gCCCAggggcgagGGCUGCUCCgugcuGGCCGCGGg -3'
miRNA:   3'- cugGGGUa-------CCGGCGAGGg----UUGGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.