miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 5' -56.7 NC_001806.1 + 50355 0.66 0.883259
Target:  5'- cGUGCUGGaUGUGCUgGCGGUgAUGGc- -3'
miRNA:   3'- cUAUGGCC-AUACGG-CGCCGgUACCac -5'
5607 5' -56.7 NC_001806.1 + 66797 0.68 0.764572
Target:  5'- cAUGCCGGgaggaucacgGCCGagcggggcCGGCCcgGGUGg -3'
miRNA:   3'- cUAUGGCCaua-------CGGC--------GCCGGuaCCAC- -5'
5607 5' -56.7 NC_001806.1 + 77125 0.68 0.775862
Target:  5'- --cGCCGaGcggGCCGgGGCCGUGGa- -3'
miRNA:   3'- cuaUGGC-CauaCGGCgCCGGUACCac -5'
5607 5' -56.7 NC_001806.1 + 146177 0.68 0.779585
Target:  5'- --gAUCGGUGgucaggcagcccggGCCGCGGCUcuGUGGUu -3'
miRNA:   3'- cuaUGGCCAUa-------------CGGCGCCGG--UACCAc -5'
5607 5' -56.7 NC_001806.1 + 112228 0.68 0.78513
Target:  5'- cGAUACCuGGacaacgGCCGCcuGGCCAccagGGUGg -3'
miRNA:   3'- -CUAUGG-CCaua---CGGCG--CCGGUa---CCAC- -5'
5607 5' -56.7 NC_001806.1 + 104694 0.67 0.803243
Target:  5'- --gGCCGGg--GaCGCGGCgGUGGUa -3'
miRNA:   3'- cuaUGGCCauaCgGCGCCGgUACCAc -5'
5607 5' -56.7 NC_001806.1 + 66837 0.67 0.811196
Target:  5'- --gGCCGGUGUgcGCCGCcuccuggGGCCcgGGc- -3'
miRNA:   3'- cuaUGGCCAUA--CGGCG-------CCGGuaCCac -5'
5607 5' -56.7 NC_001806.1 + 50095 0.67 0.812071
Target:  5'- ---gUCGGg--GCCGCGGCCGUGc-- -3'
miRNA:   3'- cuauGGCCauaCGGCGCCGGUACcac -5'
5607 5' -56.7 NC_001806.1 + 31752 0.67 0.829229
Target:  5'- ---uCUGGUGUuaaccacagaGCCGCGGCCcgGGcUGc -3'
miRNA:   3'- cuauGGCCAUA----------CGGCGCCGGuaCC-AC- -5'
5607 5' -56.7 NC_001806.1 + 119692 0.68 0.75695
Target:  5'- uGGUACCGcaaaGCCGCGGUCGcUGGUc -3'
miRNA:   3'- -CUAUGGCcauaCGGCGCCGGU-ACCAc -5'
5607 5' -56.7 NC_001806.1 + 34414 0.68 0.747323
Target:  5'- --gGCCGGgccggGCCG-GGCCGggccgGGUGg -3'
miRNA:   3'- cuaUGGCCaua--CGGCgCCGGUa----CCAC- -5'
5607 5' -56.7 NC_001806.1 + 49959 0.69 0.717873
Target:  5'- gGAUGCCGucGUGCgGCuGGCCAUcaacgGGUGg -3'
miRNA:   3'- -CUAUGGCcaUACGgCG-CCGGUA-----CCAC- -5'
5607 5' -56.7 NC_001806.1 + 30638 0.75 0.404946
Target:  5'- --gGCCGGgggGgCGCGGCCAgGGUGg -3'
miRNA:   3'- cuaUGGCCauaCgGCGCCGGUaCCAC- -5'
5607 5' -56.7 NC_001806.1 + 5595 0.71 0.575521
Target:  5'- --cGCCGGgggcccgugGCCGCGGCCcguUGGUc -3'
miRNA:   3'- cuaUGGCCaua------CGGCGCCGGu--ACCAc -5'
5607 5' -56.7 NC_001806.1 + 151291 0.7 0.657233
Target:  5'- --gGCCGGgggGCgGCGGCgGUGGg- -3'
miRNA:   3'- cuaUGGCCauaCGgCGCCGgUACCac -5'
5607 5' -56.7 NC_001806.1 + 65448 0.7 0.67762
Target:  5'- --aGCgGGggAUGCCGCGGCCcccgGGUc -3'
miRNA:   3'- cuaUGgCCa-UACGGCGCCGGua--CCAc -5'
5607 5' -56.7 NC_001806.1 + 20628 0.7 0.690795
Target:  5'- --gGCCGGggguucgaccaacggGCCGCGGCCAcGGg- -3'
miRNA:   3'- cuaUGGCCaua------------CGGCGCCGGUaCCac -5'
5607 5' -56.7 NC_001806.1 + 132651 0.7 0.691806
Target:  5'- uGGUGCgCGGg--GCCGCGGCCGcuuacgccgcgcuccUGGg- -3'
miRNA:   3'- -CUAUG-GCCauaCGGCGCCGGU---------------ACCac -5'
5607 5' -56.7 NC_001806.1 + 92239 0.69 0.717873
Target:  5'- --aACCGGUGcUGCgGCGGCgCGUGaUGg -3'
miRNA:   3'- cuaUGGCCAU-ACGgCGCCG-GUACcAC- -5'
5607 5' -56.7 NC_001806.1 + 143275 0.69 0.717873
Target:  5'- gGGUGCgCGGgagGUGUCgGUGGUgGUGGUGg -3'
miRNA:   3'- -CUAUG-GCCa--UACGG-CGCCGgUACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.