miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5608 5' -59.6 NC_001806.1 + 824 0.66 0.793647
Target:  5'- gCCCgcgCACCaCCACCGCcccuCGCCCCc--- -3'
miRNA:   3'- -GGG---GUGGaGGUGGCGu---GUGGGGuacu -5'
5608 5' -59.6 NC_001806.1 + 45657 0.66 0.791887
Target:  5'- cCCCCACCgcccacagagggCCACuCaCGCAUCCCcaGUGGg -3'
miRNA:   3'- -GGGGUGGa-----------GGUG-GcGUGUGGGG--UACU- -5'
5608 5' -59.6 NC_001806.1 + 77968 0.66 0.784793
Target:  5'- gCCCCGgggCCGCCGCucGgACCCCA-GAg -3'
miRNA:   3'- -GGGGUggaGGUGGCG--UgUGGGGUaCU- -5'
5608 5' -59.6 NC_001806.1 + 143952 0.66 0.784793
Target:  5'- cCCCCGCCcacgCCcCCGCcCcuGCCCCGg-- -3'
miRNA:   3'- -GGGGUGGa---GGuGGCGuG--UGGGGUacu -5'
5608 5' -59.6 NC_001806.1 + 141189 0.66 0.784793
Target:  5'- aCCCaaaaGCCcCCACCGaCAaaaACCCCG-GAc -3'
miRNA:   3'- -GGGg---UGGaGGUGGC-GUg--UGGGGUaCU- -5'
5608 5' -59.6 NC_001806.1 + 46686 0.66 0.784793
Target:  5'- gCCCCAgC-CCGcuCCGCuucuCGCCCCA-GAc -3'
miRNA:   3'- -GGGGUgGaGGU--GGCGu---GUGGGGUaCU- -5'
5608 5' -59.6 NC_001806.1 + 146370 0.66 0.784793
Target:  5'- cCCCCACUcCCA-CGCAU-CCCCGcGAu -3'
miRNA:   3'- -GGGGUGGaGGUgGCGUGuGGGGUaCU- -5'
5608 5' -59.6 NC_001806.1 + 5526 0.66 0.775809
Target:  5'- cCCCCGCCcCC-CCgGCGggccCACCCCGa-- -3'
miRNA:   3'- -GGGGUGGaGGuGG-CGU----GUGGGGUacu -5'
5608 5' -59.6 NC_001806.1 + 105729 0.66 0.775809
Target:  5'- gCCCUGCCauaGCCaCGgGCCCCGUGGg -3'
miRNA:   3'- -GGGGUGGaggUGGcGUgUGGGGUACU- -5'
5608 5' -59.6 NC_001806.1 + 72795 0.66 0.775809
Target:  5'- aCCaCCGCCUCCcuCCGC---CCCCAaGAc -3'
miRNA:   3'- -GG-GGUGGAGGu-GGCGuguGGGGUaCU- -5'
5608 5' -59.6 NC_001806.1 + 79779 0.66 0.775809
Target:  5'- gCCCCGgUUaCCGauuUCGCGCGCCCCccGGc -3'
miRNA:   3'- -GGGGUgGA-GGU---GGCGUGUGGGGuaCU- -5'
5608 5' -59.6 NC_001806.1 + 47198 0.66 0.773998
Target:  5'- cCCCCGCC-CgGCCGggggucccaaaaACACCCCGg-- -3'
miRNA:   3'- -GGGGUGGaGgUGGCg-----------UGUGGGGUacu -5'
5608 5' -59.6 NC_001806.1 + 145995 0.66 0.766705
Target:  5'- gCCCCGuCCcgCC-CCGC-CACCCCu--- -3'
miRNA:   3'- -GGGGU-GGa-GGuGGCGuGUGGGGuacu -5'
5608 5' -59.6 NC_001806.1 + 49015 0.66 0.766705
Target:  5'- aCCCCgGCCUCCAuCCGCGCugUg----- -3'
miRNA:   3'- -GGGG-UGGAGGU-GGCGUGugGgguacu -5'
5608 5' -59.6 NC_001806.1 + 90004 0.66 0.766705
Target:  5'- uCCCCuugACCgUCGCCGCcCcCCCCcgGAu -3'
miRNA:   3'- -GGGG---UGGaGGUGGCGuGuGGGGuaCU- -5'
5608 5' -59.6 NC_001806.1 + 144199 0.66 0.757488
Target:  5'- -gCCGCCgcagCCGCCGCcgACACCgCA-GAg -3'
miRNA:   3'- ggGGUGGa---GGUGGCG--UGUGGgGUaCU- -5'
5608 5' -59.6 NC_001806.1 + 66917 0.66 0.757488
Target:  5'- gCCCC-CCgaaaaACCGCAUgACCUCGUGGg -3'
miRNA:   3'- -GGGGuGGagg--UGGCGUG-UGGGGUACU- -5'
5608 5' -59.6 NC_001806.1 + 23822 0.66 0.757488
Target:  5'- cCCCCugcgcGCCUCgGgcCCGCuGCGCCgCAUGGc -3'
miRNA:   3'- -GGGG-----UGGAGgU--GGCG-UGUGGgGUACU- -5'
5608 5' -59.6 NC_001806.1 + 39657 0.66 0.757488
Target:  5'- aCCCUACgaCCACCagACGCaCCCGUGu -3'
miRNA:   3'- -GGGGUGgaGGUGGcgUGUG-GGGUACu -5'
5608 5' -59.6 NC_001806.1 + 122729 0.66 0.757488
Target:  5'- -aCCACgUCCGCCggcGCGCACUCCu--- -3'
miRNA:   3'- ggGGUGgAGGUGG---CGUGUGGGGuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.