miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 50150 0.68 0.960335
Target:  5'- cCGGCccc-GACGCCgCGguguuCCGCAGCUCg -3'
miRNA:   3'- cGCCGuauuUUGUGG-GU-----GGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 62638 0.68 0.943561
Target:  5'- -aGGCAcgGGAGCGCCUgcgccacggACCACuGCUUg -3'
miRNA:   3'- cgCCGUa-UUUUGUGGG---------UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 96217 0.68 0.943561
Target:  5'- gGUGGCcaucgucgAGAGCGCCC-CCgACGGCUg -3'
miRNA:   3'- -CGCCGua------UUUUGUGGGuGG-UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 66871 0.68 0.943561
Target:  5'- aCGGCGgu-GACGCUCGCU--AGCUCg -3'
miRNA:   3'- cGCCGUauuUUGUGGGUGGugUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 74984 0.68 0.946331
Target:  5'- uGgGGCAguaccgagaugcccUGGAGCACCCgacuccggacacgGCgACGGCUCu -3'
miRNA:   3'- -CgCCGU--------------AUUUUGUGGG-------------UGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 51448 0.68 0.948128
Target:  5'- cCGGCGUuucugaccuGCACCgAUCGCAGCg- -3'
miRNA:   3'- cGCCGUAuuu------UGUGGgUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 126140 0.68 0.948128
Target:  5'- gGCGGCGaGGccGGCGCCgACaCGCGGCg- -3'
miRNA:   3'- -CGCCGUaUU--UUGUGGgUG-GUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 3556 0.68 0.952443
Target:  5'- cGCGGCG---GACAgCCGCCccaggGCGGCg- -3'
miRNA:   3'- -CGCCGUauuUUGUgGGUGG-----UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 132067 0.68 0.952443
Target:  5'- aGCGuCGUGGGGCccGCCCGCCGCccCUCg -3'
miRNA:   3'- -CGCcGUAUUUUG--UGGGUGGUGucGAG- -5'
5609 3' -51.6 NC_001806.1 + 100267 0.69 0.928324
Target:  5'- -aGGCcacGGAC-CCCGCCGCAGC-Cg -3'
miRNA:   3'- cgCCGuauUUUGuGGGUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 11858 0.69 0.928324
Target:  5'- gGCGGguUGGuauACGCUCGCCGgGGC-Ca -3'
miRNA:   3'- -CGCCguAUUu--UGUGGGUGGUgUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 85456 0.69 0.928324
Target:  5'- cCGGCAcguc-CGCCCACCugcacuacCGGCUCa -3'
miRNA:   3'- cGCCGUauuuuGUGGGUGGu-------GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 139371 0.69 0.928324
Target:  5'- aUGGCcauAAACGCCgACUACGGCaUCa -3'
miRNA:   3'- cGCCGuauUUUGUGGgUGGUGUCG-AG- -5'
5609 3' -51.6 NC_001806.1 + 3225 0.69 0.932086
Target:  5'- cGCGcaggcGCAUGAGcaccagcgcgucgcGCACgaACCGCAGCUCg -3'
miRNA:   3'- -CGC-----CGUAUUU--------------UGUGggUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 80296 0.69 0.926117
Target:  5'- aCGGCAgccgguggccACGCCCACCACAuCUg -3'
miRNA:   3'- cGCCGUauuu------UGUGGGUGGUGUcGAg -5'
5609 3' -51.6 NC_001806.1 + 104305 0.69 0.93366
Target:  5'- gGUGGCGUGAAACuCCCGCaccucuuCGGC-Ca -3'
miRNA:   3'- -CGCCGUAUUUUGuGGGUGgu-----GUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 113524 0.69 0.93366
Target:  5'- aCGGCAgcGAgcacgucuucuGCGCCCugGCC-CGGCUCg -3'
miRNA:   3'- cGCCGUauUU-----------UGUGGG--UGGuGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 4044 0.69 0.93366
Target:  5'- cGCGGCGUcgcccagcucGGGCGCCCA-CACGGC-Cg -3'
miRNA:   3'- -CGCCGUAu---------UUUGUGGGUgGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 74508 0.69 0.935723
Target:  5'- uGCGGCGcuucGACGCCCuagaugcggcccuggGCCAgCAGCUg -3'
miRNA:   3'- -CGCCGUauu-UUGUGGG---------------UGGU-GUCGAg -5'
5609 3' -51.6 NC_001806.1 + 132363 0.69 0.938242
Target:  5'- uGCGGCcacgcGGGCACCCGCaacgaguCACGGCa- -3'
miRNA:   3'- -CGCCGuau--UUUGUGGGUG-------GUGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.