miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 148131 0.69 0.922155
Target:  5'- gGCuGCGUGAGACGCCCcGCCcgucacggggggcGCGGCg- -3'
miRNA:   3'- -CGcCGUAUUUUGUGGG-UGG-------------UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 46151 0.69 0.922728
Target:  5'- aGgGGCcgGAcgcACACCCACCACcGCc- -3'
miRNA:   3'- -CgCCGuaUUu--UGUGGGUGGUGuCGag -5'
5609 3' -51.6 NC_001806.1 + 72387 0.69 0.922728
Target:  5'- cGCGGCuccugcGGACuugaCgGCCGCGGCUCu -3'
miRNA:   3'- -CGCCGuau---UUUGug--GgUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 22383 0.69 0.922728
Target:  5'- cGUGGCGcGGGccguGC-CCCACCugGGCUa -3'
miRNA:   3'- -CGCCGUaUUU----UGuGGGUGGugUCGAg -5'
5609 3' -51.6 NC_001806.1 + 73974 0.69 0.922728
Target:  5'- uCGGCGUA--AUGCCCGCCcCGGC-Cg -3'
miRNA:   3'- cGCCGUAUuuUGUGGGUGGuGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 94703 0.69 0.922728
Target:  5'- uGCGGCu--GGACGCCaacgaGCUGCGGCg- -3'
miRNA:   3'- -CGCCGuauUUUGUGGg----UGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 80296 0.69 0.926117
Target:  5'- aCGGCAgccgguggccACGCCCACCACAuCUg -3'
miRNA:   3'- cGCCGUauuu------UGUGGGUGGUGUcGAg -5'
5609 3' -51.6 NC_001806.1 + 100267 0.69 0.928324
Target:  5'- -aGGCcacGGAC-CCCGCCGCAGC-Cg -3'
miRNA:   3'- cgCCGuauUUUGuGGGUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 132067 0.68 0.952443
Target:  5'- aGCGuCGUGGGGCccGCCCGCCGCccCUCg -3'
miRNA:   3'- -CGCcGUAUUUUG--UGGGUGGUGucGAG- -5'
5609 3' -51.6 NC_001806.1 + 132199 0.68 0.952443
Target:  5'- gGCGGcCAUucgcGACACCCcCCAguGCg- -3'
miRNA:   3'- -CGCC-GUAuu--UUGUGGGuGGUguCGag -5'
5609 3' -51.6 NC_001806.1 + 136753 0.68 0.952443
Target:  5'- gGUGGCGUugaGGAGCGCgugaaagaucgCCGCCuGCAGCUg -3'
miRNA:   3'- -CGCCGUA---UUUUGUG-----------GGUGG-UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 24243 0.68 0.952443
Target:  5'- cGCGGCAgc--ACGCCUACC-UGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUGGGUGGuGUCGag -5'
5609 3' -51.6 NC_001806.1 + 95309 0.68 0.952443
Target:  5'- cGCGGCGgac-GCGCCCAaggGCGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUGGGUgg-UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 3556 0.68 0.952443
Target:  5'- cGCGGCG---GACAgCCGCCccaggGCGGCg- -3'
miRNA:   3'- -CGCCGUauuUUGUgGGUGG-----UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 126140 0.68 0.948128
Target:  5'- gGCGGCGaGGccGGCGCCgACaCGCGGCg- -3'
miRNA:   3'- -CGCCGUaUU--UUGUGGgUG-GUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 51448 0.68 0.948128
Target:  5'- cCGGCGUuucugaccuGCACCgAUCGCAGCg- -3'
miRNA:   3'- cGCCGUAuuu------UGUGGgUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 74984 0.68 0.946331
Target:  5'- uGgGGCAguaccgagaugcccUGGAGCACCCgacuccggacacgGCgACGGCUCu -3'
miRNA:   3'- -CgCCGU--------------AUUUUGUGGG-------------UGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 66871 0.68 0.943561
Target:  5'- aCGGCGgu-GACGCUCGCU--AGCUCg -3'
miRNA:   3'- cGCCGUauuUUGUGGGUGGugUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 96217 0.68 0.943561
Target:  5'- gGUGGCcaucgucgAGAGCGCCC-CCgACGGCUg -3'
miRNA:   3'- -CGCCGua------UUUUGUGGGuGG-UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 29827 0.68 0.956511
Target:  5'- cGgGGCGUcucACgcagccccccaGCCgGCCGCGGCUCg -3'
miRNA:   3'- -CgCCGUAuuuUG-----------UGGgUGGUGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.