miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 24243 0.68 0.952443
Target:  5'- cGCGGCAgc--ACGCCUACC-UGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUGGGUGGuGUCGag -5'
5609 3' -51.6 NC_001806.1 + 62638 0.68 0.943561
Target:  5'- -aGGCAcgGGAGCGCCUgcgccacggACCACuGCUUg -3'
miRNA:   3'- cgCCGUa-UUUUGUGGG---------UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 96217 0.68 0.943561
Target:  5'- gGUGGCcaucgucgAGAGCGCCC-CCgACGGCUg -3'
miRNA:   3'- -CGCCGua------UUUUGUGGGuGG-UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 66871 0.68 0.943561
Target:  5'- aCGGCGgu-GACGCUCGCU--AGCUCg -3'
miRNA:   3'- cGCCGUauuUUGUGGGUGGugUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 74984 0.68 0.946331
Target:  5'- uGgGGCAguaccgagaugcccUGGAGCACCCgacuccggacacgGCgACGGCUCu -3'
miRNA:   3'- -CgCCGU--------------AUUUUGUGGG-------------UGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 51448 0.68 0.948128
Target:  5'- cCGGCGUuucugaccuGCACCgAUCGCAGCg- -3'
miRNA:   3'- cGCCGUAuuu------UGUGGgUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 126140 0.68 0.948128
Target:  5'- gGCGGCGaGGccGGCGCCgACaCGCGGCg- -3'
miRNA:   3'- -CGCCGUaUU--UUGUGGgUG-GUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 3556 0.68 0.952443
Target:  5'- cGCGGCG---GACAgCCGCCccaggGCGGCg- -3'
miRNA:   3'- -CGCCGUauuUUGUgGGUGG-----UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 132067 0.68 0.952443
Target:  5'- aGCGuCGUGGGGCccGCCCGCCGCccCUCg -3'
miRNA:   3'- -CGCcGUAUUUUG--UGGGUGGUGucGAG- -5'
5609 3' -51.6 NC_001806.1 + 132199 0.68 0.952443
Target:  5'- gGCGGcCAUucgcGACACCCcCCAguGCg- -3'
miRNA:   3'- -CGCC-GUAuu--UUGUGGGuGGUguCGag -5'
5609 3' -51.6 NC_001806.1 + 136753 0.68 0.952443
Target:  5'- gGUGGCGUugaGGAGCGCgugaaagaucgCCGCCuGCAGCUg -3'
miRNA:   3'- -CGCCGUA---UUUUGUG-----------GGUGG-UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 88938 0.67 0.973305
Target:  5'- gGUGGgGUuGAAC-CCCGCCGgGGCg- -3'
miRNA:   3'- -CGCCgUAuUUUGuGGGUGGUgUCGag -5'
5609 3' -51.6 NC_001806.1 + 77961 0.67 0.973305
Target:  5'- cGCGGCG----GC-CCCgggGCCGCcGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGuGGG---UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 22241 0.67 0.973305
Target:  5'- cGCGGCugcuguACACCCcggacgcggagGCCAUgggguGGCUCc -3'
miRNA:   3'- -CGCCGuauuu-UGUGGG-----------UGGUG-----UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 77164 0.67 0.970399
Target:  5'- cGUGGCccAAcACGCCgACCugAGCg- -3'
miRNA:   3'- -CGCCGuaUUuUGUGGgUGGugUCGag -5'
5609 3' -51.6 NC_001806.1 + 78887 0.67 0.970399
Target:  5'- gGCGGCAcagcucccGCGCCUGuCCGC-GCUCa -3'
miRNA:   3'- -CGCCGUauuu----UGUGGGU-GGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 72559 0.67 0.970399
Target:  5'- gGgGGCccgGGGccACACCCGCCcACAGC-Cg -3'
miRNA:   3'- -CgCCGua-UUU--UGUGGGUGG-UGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 26488 0.67 0.970399
Target:  5'- cGCGGUcaGGAGCGCgC-CCGCGGC-Cg -3'
miRNA:   3'- -CGCCGuaUUUUGUGgGuGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 131711 0.67 0.967273
Target:  5'- cGCGGUAUGGcuGCcCCC-CCGC-GCUCc -3'
miRNA:   3'- -CGCCGUAUUu-UGuGGGuGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 108656 0.67 0.973305
Target:  5'- uGCGGaCAU---GCGCCCGCgGcCAGCg- -3'
miRNA:   3'- -CGCC-GUAuuuUGUGGGUGgU-GUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.