miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 77961 0.67 0.973305
Target:  5'- cGCGGCG----GC-CCCgggGCCGCcGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGuGGG---UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 78887 0.67 0.970399
Target:  5'- gGCGGCAcagcucccGCGCCUGuCCGC-GCUCa -3'
miRNA:   3'- -CGCCGUauuu----UGUGGGU-GGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 79077 0.69 0.938739
Target:  5'- gGCGGCG-AGGACGuCCuCGCCGcCAGCg- -3'
miRNA:   3'- -CGCCGUaUUUUGU-GG-GUGGU-GUCGag -5'
5609 3' -51.6 NC_001806.1 + 79480 0.66 0.986569
Target:  5'- cGCGGCccccuGgGCCgGCaguCACGGCUCg -3'
miRNA:   3'- -CGCCGuauuuUgUGGgUG---GUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 80296 0.69 0.926117
Target:  5'- aCGGCAgccgguggccACGCCCACCACAuCUg -3'
miRNA:   3'- cGCCGUauuu------UGUGGGUGGUGUcGAg -5'
5609 3' -51.6 NC_001806.1 + 80582 0.69 0.938739
Target:  5'- -gGGCAUGuAGCACCCGgggaguauCCgGCGGUUCg -3'
miRNA:   3'- cgCCGUAUuUUGUGGGU--------GG-UGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 82519 0.7 0.904398
Target:  5'- cCGGUGUAGGGCuugcccaguCCCGCCAUGGCg- -3'
miRNA:   3'- cGCCGUAUUUUGu--------GGGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 84688 0.67 0.975998
Target:  5'- -aGGUAUuuguACcaaaGCCCACCGC-GCUCg -3'
miRNA:   3'- cgCCGUAuuu-UG----UGGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 84847 0.66 0.988165
Target:  5'- aCGGCAaGGAGCGCCgGCgGuCGcGCUCc -3'
miRNA:   3'- cGCCGUaUUUUGUGGgUGgU-GU-CGAG- -5'
5609 3' -51.6 NC_001806.1 + 85456 0.69 0.928324
Target:  5'- cCGGCAcguc-CGCCCACCugcacuacCGGCUCa -3'
miRNA:   3'- cGCCGUauuuuGUGGGUGGu-------GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 86670 0.66 0.98078
Target:  5'- gGCGGcCGUGAGGC-CgCGgCACAGCa- -3'
miRNA:   3'- -CGCC-GUAUUUUGuGgGUgGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 87671 0.66 0.984627
Target:  5'- gGCGGCGUAGuAgGCggggaugUCGCgAUAGCUCa -3'
miRNA:   3'- -CGCCGUAUUuUgUG-------GGUGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 88063 0.71 0.876436
Target:  5'- -gGGCGUGGGcAgGCCCcugGCCGCcAGCUCg -3'
miRNA:   3'- cgCCGUAUUU-UgUGGG---UGGUG-UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 88938 0.67 0.973305
Target:  5'- gGUGGgGUuGAAC-CCCGCCGgGGCg- -3'
miRNA:   3'- -CGCCgUAuUUUGuGGGUGGUgUCGag -5'
5609 3' -51.6 NC_001806.1 + 89750 0.67 0.967273
Target:  5'- aGCGGCc----ACGCCCACC--GGCUg -3'
miRNA:   3'- -CGCCGuauuuUGUGGGUGGugUCGAg -5'
5609 3' -51.6 NC_001806.1 + 90355 0.75 0.669251
Target:  5'- cGCGGUGUcccugaaacuGACGCCCucgcACUACAGCUCg -3'
miRNA:   3'- -CGCCGUAuu--------UUGUGGG----UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 90843 0.67 0.973305
Target:  5'- gGCGGuCGUGGG--ACCCGCCGCcguGGCa- -3'
miRNA:   3'- -CGCC-GUAUUUugUGGGUGGUG---UCGag -5'
5609 3' -51.6 NC_001806.1 + 91200 0.7 0.890908
Target:  5'- cGgGGCGUAccuGGCGCgCGCCGCGGgaCUCg -3'
miRNA:   3'- -CgCCGUAUu--UUGUGgGUGGUGUC--GAG- -5'
5609 3' -51.6 NC_001806.1 + 94638 0.67 0.978487
Target:  5'- gGgGGCGacGAuCGCCCGCCGCcuGGCg- -3'
miRNA:   3'- -CgCCGUauUUuGUGGGUGGUG--UCGag -5'
5609 3' -51.6 NC_001806.1 + 94703 0.69 0.922728
Target:  5'- uGCGGCu--GGACGCCaacgaGCUGCGGCg- -3'
miRNA:   3'- -CGCCGuauUUUGUGGg----UGGUGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.