miRNA display CGI


Results 101 - 120 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 95309 0.68 0.952443
Target:  5'- cGCGGCGgac-GCGCCCAaggGCGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUGGGUgg-UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 96015 0.69 0.938739
Target:  5'- aCGGCAUuuccggaauAACGCCCACU-CAGCg- -3'
miRNA:   3'- cGCCGUAuu-------UUGUGGGUGGuGUCGag -5'
5609 3' -51.6 NC_001806.1 + 96217 0.68 0.943561
Target:  5'- gGUGGCcaucgucgAGAGCGCCC-CCgACGGCUg -3'
miRNA:   3'- -CGCCGua------UUUUGUGGGuGG-UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 97608 0.66 0.986569
Target:  5'- uCGGCA-AGGACGCCCGCgAC-GC-Ca -3'
miRNA:   3'- cGCCGUaUUUUGUGGGUGgUGuCGaG- -5'
5609 3' -51.6 NC_001806.1 + 98141 0.67 0.978487
Target:  5'- cGCGGCcc--GGgGCCUGCUACAGC-Cg -3'
miRNA:   3'- -CGCCGuauuUUgUGGGUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 100106 0.66 0.98078
Target:  5'- cGCGGCcgGcuGAcCGCCCGCCugGCGGUc- -3'
miRNA:   3'- -CGCCGuaU--UUuGUGGGUGG--UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 100136 0.72 0.836242
Target:  5'- cGCGGCuau-GGCcCCCACCaacGCGGCUa -3'
miRNA:   3'- -CGCCGuauuUUGuGGGUGG---UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 100267 0.69 0.928324
Target:  5'- -aGGCcacGGAC-CCCGCCGCAGC-Cg -3'
miRNA:   3'- cgCCGuauUUUGuGGGUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 100632 0.66 0.980337
Target:  5'- cCGGCGaucccggcCugCCGCCGCcGCUCg -3'
miRNA:   3'- cGCCGUauuuu---GugGGUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 101021 0.66 0.982886
Target:  5'- aGCGGCG------GCCCGCgGC-GCUCg -3'
miRNA:   3'- -CGCCGUauuuugUGGGUGgUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 101135 0.67 0.978487
Target:  5'- aCGGCc---AGCACCCGCCcCAcCUCg -3'
miRNA:   3'- cGCCGuauuUUGUGGGUGGuGUcGAG- -5'
5609 3' -51.6 NC_001806.1 + 104305 0.69 0.93366
Target:  5'- gGUGGCGUGAAACuCCCGCaccucuuCGGC-Ca -3'
miRNA:   3'- -CGCCGUAUUUUGuGGGUGgu-----GUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 105721 0.69 0.916875
Target:  5'- gGCGGCA---AGC-CCUGCCAUAGC-Ca -3'
miRNA:   3'- -CGCCGUauuUUGuGGGUGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 107222 0.72 0.809658
Target:  5'- uCGGCGUAcgacgcaguGGCGCCCAgCGCAGCcCa -3'
miRNA:   3'- cGCCGUAUu--------UUGUGGGUgGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 107380 0.68 0.956511
Target:  5'- gGCGGUgcagcgGGAacGCGCCCGCCGgAGCc- -3'
miRNA:   3'- -CGCCGua----UUU--UGUGGGUGGUgUCGag -5'
5609 3' -51.6 NC_001806.1 + 107918 0.67 0.978487
Target:  5'- aGCGGCuggugcGCACCCaaaaccagcgcgACCugGGgCUCg -3'
miRNA:   3'- -CGCCGuauuu-UGUGGG------------UGGugUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 108547 0.73 0.781509
Target:  5'- uGCGGCuggccGCGCCCGCCGCuccGCg- -3'
miRNA:   3'- -CGCCGuauuuUGUGGGUGGUGu--CGag -5'
5609 3' -51.6 NC_001806.1 + 108590 0.66 0.98078
Target:  5'- aCGGUccacguCACCCACCGCuAGCa- -3'
miRNA:   3'- cGCCGuauuuuGUGGGUGGUG-UCGag -5'
5609 3' -51.6 NC_001806.1 + 108656 0.67 0.973305
Target:  5'- uGCGGaCAU---GCGCCCGCgGcCAGCg- -3'
miRNA:   3'- -CGCC-GUAuuuUGUGGGUGgU-GUCGag -5'
5609 3' -51.6 NC_001806.1 + 109198 1.11 0.004933
Target:  5'- uGCGGCAUAAAACACCCACCACAGCUCc -3'
miRNA:   3'- -CGCCGUAUUUUGUGGGUGGUGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.