miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 74984 0.68 0.946331
Target:  5'- uGgGGCAguaccgagaugcccUGGAGCACCCgacuccggacacgGCgACGGCUCu -3'
miRNA:   3'- -CgCCGU--------------AUUUUGUGGG-------------UGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 74508 0.69 0.935723
Target:  5'- uGCGGCGcuucGACGCCCuagaugcggcccuggGCCAgCAGCUg -3'
miRNA:   3'- -CGCCGUauu-UUGUGGG---------------UGGU-GUCGAg -5'
5609 3' -51.6 NC_001806.1 + 73974 0.69 0.922728
Target:  5'- uCGGCGUA--AUGCCCGCCcCGGC-Cg -3'
miRNA:   3'- cGCCGUAUuuUGUGGGUGGuGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 72559 0.67 0.970399
Target:  5'- gGgGGCccgGGGccACACCCGCCcACAGC-Cg -3'
miRNA:   3'- -CgCCGua-UUU--UGUGGGUGG-UGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 72387 0.69 0.922728
Target:  5'- cGCGGCuccugcGGACuugaCgGCCGCGGCUCu -3'
miRNA:   3'- -CGCCGuau---UUUGug--GgUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 72090 0.67 0.978487
Target:  5'- cGCGGCGggccugcugGAGACAcaaugcCCCGCaCACAcGUUCu -3'
miRNA:   3'- -CGCCGUa--------UUUUGU------GGGUG-GUGU-CGAG- -5'
5609 3' -51.6 NC_001806.1 + 69416 0.73 0.765946
Target:  5'- gGCGGCGggcguccccgcgcGGACGCCCaccgGCCACGGaCUCg -3'
miRNA:   3'- -CGCCGUau-----------UUUGUGGG----UGGUGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 68281 0.66 0.988165
Target:  5'- aCGGCcaagcuGCGCgCCGCCAUGGCg- -3'
miRNA:   3'- cGCCGuauuu-UGUG-GGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 67737 0.66 0.98078
Target:  5'- -aGGCG-GAAcCACCCACCccACAGC-Ca -3'
miRNA:   3'- cgCCGUaUUUuGUGGGUGG--UGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 67122 0.74 0.700823
Target:  5'- cGCGcGCGU---GCACCCGCUcuCGGCUCg -3'
miRNA:   3'- -CGC-CGUAuuuUGUGGGUGGu-GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 66871 0.68 0.943561
Target:  5'- aCGGCGgu-GACGCUCGCU--AGCUCg -3'
miRNA:   3'- cGCCGUauuUUGUGGGUGGugUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 66427 0.74 0.721576
Target:  5'- uGCGGU--GGGGCGCCC-CCGCAGgUCc -3'
miRNA:   3'- -CGCCGuaUUUUGUGGGuGGUGUCgAG- -5'
5609 3' -51.6 NC_001806.1 + 64754 0.66 0.988165
Target:  5'- aCGGCAUcucccAGAAaGCgCGCCACGGcCUCc -3'
miRNA:   3'- cGCCGUA-----UUUUgUGgGUGGUGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 64479 0.66 0.98078
Target:  5'- uGCGGUA-AAGGCgagcggaccgGCUCACCAgCGGCUUg -3'
miRNA:   3'- -CGCCGUaUUUUG----------UGGGUGGU-GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 62638 0.68 0.943561
Target:  5'- -aGGCAcgGGAGCGCCUgcgccacggACCACuGCUUg -3'
miRNA:   3'- cgCCGUa-UUUUGUGGG---------UGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 60428 0.67 0.978487
Target:  5'- cCGGCGggc--CAUCCGCCGggaacacacCAGCUCg -3'
miRNA:   3'- cGCCGUauuuuGUGGGUGGU---------GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 57170 0.72 0.809658
Target:  5'- uGCGcGCAUAAA--GCCCAgCACGGCg- -3'
miRNA:   3'- -CGC-CGUAUUUugUGGGUgGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 56862 0.66 0.984812
Target:  5'- cGCGGCGggcccACcgAUCCACCAgAGCg- -3'
miRNA:   3'- -CGCCGUauuu-UG--UGGGUGGUgUCGag -5'
5609 3' -51.6 NC_001806.1 + 56735 0.67 0.978487
Target:  5'- gGCGGCGggaAAGAgACUCGCCuGCGGUg- -3'
miRNA:   3'- -CGCCGUa--UUUUgUGGGUGG-UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 56490 0.69 0.916875
Target:  5'- aUGGCcuccgaGAAACACCUgggGCCACAGCg- -3'
miRNA:   3'- cGCCGua----UUUUGUGGG---UGGUGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.