Results 121 - 140 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5609 | 3' | -51.6 | NC_001806.1 | + | 96015 | 0.69 | 0.938739 |
Target: 5'- aCGGCAUuuccggaauAACGCCCACU-CAGCg- -3' miRNA: 3'- cGCCGUAuu-------UUGUGGGUGGuGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 62638 | 0.68 | 0.943561 |
Target: 5'- -aGGCAcgGGAGCGCCUgcgccacggACCACuGCUUg -3' miRNA: 3'- cgCCGUa-UUUUGUGGG---------UGGUGuCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 100267 | 0.69 | 0.928324 |
Target: 5'- -aGGCcacGGAC-CCCGCCGCAGC-Cg -3' miRNA: 3'- cgCCGuauUUUGuGGGUGGUGUCGaG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 80296 | 0.69 | 0.926117 |
Target: 5'- aCGGCAgccgguggccACGCCCACCACAuCUg -3' miRNA: 3'- cGCCGUauuu------UGUGGGUGGUGUcGAg -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 94703 | 0.69 | 0.922728 |
Target: 5'- uGCGGCu--GGACGCCaacgaGCUGCGGCg- -3' miRNA: 3'- -CGCCGuauUUUGUGGg----UGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 152013 | 0.7 | 0.893686 |
Target: 5'- cGCGGCcccgccccccACGCCCGCCGCGcGCg- -3' miRNA: 3'- -CGCCGuauuu-----UGUGGGUGGUGU-CGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 1811 | 0.7 | 0.897778 |
Target: 5'- cGCGGUAgc--GCACguugCCGCCGCGGCa- -3' miRNA: 3'- -CGCCGUauuuUGUG----GGUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 50682 | 0.7 | 0.904398 |
Target: 5'- cGCGGCGgcc-ACGCgCGCCAUucuggccgccgGGCUCg -3' miRNA: 3'- -CGCCGUauuuUGUGgGUGGUG-----------UCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 82519 | 0.7 | 0.904398 |
Target: 5'- cCGGUGUAGGGCuugcccaguCCCGCCAUGGCg- -3' miRNA: 3'- cGCCGUAUUUUGu--------GGGUGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 130139 | 0.7 | 0.910764 |
Target: 5'- uGCGGCc--AGugGCCCGC-GCAGUUCu -3' miRNA: 3'- -CGCCGuauUUugUGGGUGgUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 146181 | 0.7 | 0.910764 |
Target: 5'- gGUGGUc--AGGCAgCCCggGCCGCGGCUCu -3' miRNA: 3'- -CGCCGuauUUUGU-GGG--UGGUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 21286 | 0.7 | 0.910764 |
Target: 5'- cCGGCGggacgGGAGgGCCC-CCGCGGCg- -3' miRNA: 3'- cGCCGUa----UUUUgUGGGuGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 105721 | 0.69 | 0.916875 |
Target: 5'- gGCGGCA---AGC-CCUGCCAUAGC-Ca -3' miRNA: 3'- -CGCCGUauuUUGuGGGUGGUGUCGaG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 56490 | 0.69 | 0.916875 |
Target: 5'- aUGGCcuccgaGAAACACCUgggGCCACAGCg- -3' miRNA: 3'- cGCCGua----UUUUGUGGG---UGGUGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 135548 | 0.69 | 0.916875 |
Target: 5'- gGCGGCugcc-GCAUCCACCggucACGGaCUCg -3' miRNA: 3'- -CGCCGuauuuUGUGGGUGG----UGUC-GAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 148131 | 0.69 | 0.922155 |
Target: 5'- gGCuGCGUGAGACGCCCcGCCcgucacggggggcGCGGCg- -3' miRNA: 3'- -CGcCGUAUUUUGUGGG-UGG-------------UGUCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 46151 | 0.69 | 0.922728 |
Target: 5'- aGgGGCcgGAcgcACACCCACCACcGCc- -3' miRNA: 3'- -CgCCGuaUUu--UGUGGGUGGUGuCGag -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 72387 | 0.69 | 0.922728 |
Target: 5'- cGCGGCuccugcGGACuugaCgGCCGCGGCUCu -3' miRNA: 3'- -CGCCGuau---UUUGug--GgUGGUGUCGAG- -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 22383 | 0.69 | 0.922728 |
Target: 5'- cGUGGCGcGGGccguGC-CCCACCugGGCUa -3' miRNA: 3'- -CGCCGUaUUU----UGuGGGUGGugUCGAg -5' |
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5609 | 3' | -51.6 | NC_001806.1 | + | 73974 | 0.69 | 0.922728 |
Target: 5'- uCGGCGUA--AUGCCCGCCcCGGC-Cg -3' miRNA: 3'- cGCCGUAUuuUGUGGGUGGuGUCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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