miRNA display CGI


Results 101 - 120 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 11858 0.69 0.928324
Target:  5'- gGCGGguUGGuauACGCUCGCCGgGGC-Ca -3'
miRNA:   3'- -CGCCguAUUu--UGUGGGUGGUgUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 85456 0.69 0.928324
Target:  5'- cCGGCAcguc-CGCCCACCugcacuacCGGCUCa -3'
miRNA:   3'- cGCCGUauuuuGUGGGUGGu-------GUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 139371 0.69 0.928324
Target:  5'- aUGGCcauAAACGCCgACUACGGCaUCa -3'
miRNA:   3'- cGCCGuauUUUGUGGgUGGUGUCG-AG- -5'
5609 3' -51.6 NC_001806.1 + 3225 0.69 0.932086
Target:  5'- cGCGcaggcGCAUGAGcaccagcgcgucgcGCACgaACCGCAGCUCg -3'
miRNA:   3'- -CGC-----CGUAUUU--------------UGUGggUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 104305 0.69 0.93366
Target:  5'- gGUGGCGUGAAACuCCCGCaccucuuCGGC-Ca -3'
miRNA:   3'- -CGCCGUAUUUUGuGGGUGgu-----GUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 135548 0.69 0.916875
Target:  5'- gGCGGCugcc-GCAUCCACCggucACGGaCUCg -3'
miRNA:   3'- -CGCCGuauuuUGUGGGUGG----UGUC-GAG- -5'
5609 3' -51.6 NC_001806.1 + 56490 0.69 0.916875
Target:  5'- aUGGCcuccgaGAAACACCUgggGCCACAGCg- -3'
miRNA:   3'- cGCCGua----UUUUGUGGG---UGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 23361 0.7 0.883793
Target:  5'- aGCGGCGc-GGACGCCC-CC--GGCUCg -3'
miRNA:   3'- -CGCCGUauUUUGUGGGuGGugUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 4267 0.7 0.883793
Target:  5'- uCGGCGUccAGCucgACCCGCCGgGGCUg -3'
miRNA:   3'- cGCCGUAuuUUG---UGGGUGGUgUCGAg -5'
5609 3' -51.6 NC_001806.1 + 113417 0.7 0.890908
Target:  5'- -gGGgGUGGGACGCCaCGCCAUGGCc- -3'
miRNA:   3'- cgCCgUAUUUUGUGG-GUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 91200 0.7 0.890908
Target:  5'- cGgGGCGUAccuGGCGCgCGCCGCGGgaCUCg -3'
miRNA:   3'- -CgCCGUAUu--UUGUGgGUGGUGUC--GAG- -5'
5609 3' -51.6 NC_001806.1 + 303 0.7 0.893686
Target:  5'- cGCGGCcccgccccccACGCCCGCCGCGcGCg- -3'
miRNA:   3'- -CGCCGuauuu-----UGUGGGUGGUGU-CGag -5'
5609 3' -51.6 NC_001806.1 + 152013 0.7 0.893686
Target:  5'- cGCGGCcccgccccccACGCCCGCCGCGcGCg- -3'
miRNA:   3'- -CGCCGuauuu-----UGUGGGUGGUGU-CGag -5'
5609 3' -51.6 NC_001806.1 + 1811 0.7 0.897778
Target:  5'- cGCGGUAgc--GCACguugCCGCCGCGGCa- -3'
miRNA:   3'- -CGCCGUauuuUGUG----GGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 50682 0.7 0.904398
Target:  5'- cGCGGCGgcc-ACGCgCGCCAUucuggccgccgGGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUGgGUGGUG-----------UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 82519 0.7 0.904398
Target:  5'- cCGGUGUAGGGCuugcccaguCCCGCCAUGGCg- -3'
miRNA:   3'- cGCCGUAUUUUGu--------GGGUGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 130139 0.7 0.910764
Target:  5'- uGCGGCc--AGugGCCCGC-GCAGUUCu -3'
miRNA:   3'- -CGCCGuauUUugUGGGUGgUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 146181 0.7 0.910764
Target:  5'- gGUGGUc--AGGCAgCCCggGCCGCGGCUCu -3'
miRNA:   3'- -CGCCGuauUUUGU-GGG--UGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 21286 0.7 0.910764
Target:  5'- cCGGCGggacgGGAGgGCCC-CCGCGGCg- -3'
miRNA:   3'- cGCCGUa----UUUUgUGGGuGGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 105721 0.69 0.916875
Target:  5'- gGCGGCA---AGC-CCUGCCAUAGC-Ca -3'
miRNA:   3'- -CGCCGUauuUUGuGGGUGGUGUCGaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.