miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 3' -51.6 NC_001806.1 + 72559 0.67 0.970399
Target:  5'- gGgGGCccgGGGccACACCCGCCcACAGC-Cg -3'
miRNA:   3'- -CgCCGua-UUU--UGUGGGUGG-UGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 77164 0.67 0.970399
Target:  5'- cGUGGCccAAcACGCCgACCugAGCg- -3'
miRNA:   3'- -CGCCGuaUUuUGUGGgUGGugUCGag -5'
5609 3' -51.6 NC_001806.1 + 78887 0.67 0.970399
Target:  5'- gGCGGCAcagcucccGCGCCUGuCCGC-GCUCa -3'
miRNA:   3'- -CGCCGUauuu----UGUGGGU-GGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 26488 0.67 0.970399
Target:  5'- cGCGGUcaGGAGCGCgC-CCGCGGC-Cg -3'
miRNA:   3'- -CGCCGuaUUUUGUGgGuGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 131711 0.67 0.967273
Target:  5'- cGCGGUAUGGcuGCcCCC-CCGC-GCUCc -3'
miRNA:   3'- -CGCCGUAUUu-UGuGGGuGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 89750 0.67 0.967273
Target:  5'- aGCGGCc----ACGCCCACC--GGCUg -3'
miRNA:   3'- -CGCCGuauuuUGUGGGUGGugUCGAg -5'
5609 3' -51.6 NC_001806.1 + 50754 0.68 0.96392
Target:  5'- gGUGGCGUGcguGACACUgGCCGC-GUUUg -3'
miRNA:   3'- -CGCCGUAUu--UUGUGGgUGGUGuCGAG- -5'
5609 3' -51.6 NC_001806.1 + 26255 0.68 0.96392
Target:  5'- gGCGGCGggcAGCccggGCCCcCCGCGGC-Cg -3'
miRNA:   3'- -CGCCGUauuUUG----UGGGuGGUGUCGaG- -5'
5609 3' -51.6 NC_001806.1 + 13554 0.68 0.96392
Target:  5'- uGCGGCAggc-GCGCuCCAaCACGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUG-GGUgGUGUCGag -5'
5609 3' -51.6 NC_001806.1 + 3091 0.68 0.96392
Target:  5'- cGCGGCG----GCGgCgGCCGCggAGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUgGgUGGUG--UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 43276 0.68 0.960335
Target:  5'- cGCGGCcguuc-CGCCCucggaggcggaGCCGCGGCUg -3'
miRNA:   3'- -CGCCGuauuuuGUGGG-----------UGGUGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 50150 0.68 0.960335
Target:  5'- cCGGCccc-GACGCCgCGguguuCCGCAGCUCg -3'
miRNA:   3'- cGCCGuauuUUGUGG-GU-----GGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 137654 0.68 0.960335
Target:  5'- uUGGCcgAGGGCGCCCugaCGCGGUUg -3'
miRNA:   3'- cGCCGuaUUUUGUGGGug-GUGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 119032 0.68 0.956511
Target:  5'- gGCGGCGcu--GCGCCUugCGuggGGCUCg -3'
miRNA:   3'- -CGCCGUauuuUGUGGGugGUg--UCGAG- -5'
5609 3' -51.6 NC_001806.1 + 107380 0.68 0.956511
Target:  5'- gGCGGUgcagcgGGAacGCGCCCGCCGgAGCc- -3'
miRNA:   3'- -CGCCGua----UUU--UGUGGGUGGUgUCGag -5'
5609 3' -51.6 NC_001806.1 + 6130 0.68 0.956511
Target:  5'- cCGGCGcGAccGACGCCCGCagACGGCg- -3'
miRNA:   3'- cGCCGUaUU--UUGUGGGUGg-UGUCGag -5'
5609 3' -51.6 NC_001806.1 + 29827 0.68 0.956511
Target:  5'- cGgGGCGUcucACgcagccccccaGCCgGCCGCGGCUCg -3'
miRNA:   3'- -CgCCGUAuuuUG-----------UGGgUGGUGUCGAG- -5'
5609 3' -51.6 NC_001806.1 + 132199 0.68 0.952443
Target:  5'- gGCGGcCAUucgcGACACCCcCCAguGCg- -3'
miRNA:   3'- -CGCC-GUAuu--UUGUGGGuGGUguCGag -5'
5609 3' -51.6 NC_001806.1 + 136753 0.68 0.952443
Target:  5'- gGUGGCGUugaGGAGCGCgugaaagaucgCCGCCuGCAGCUg -3'
miRNA:   3'- -CGCCGUA---UUUUGUG-----------GGUGG-UGUCGAg -5'
5609 3' -51.6 NC_001806.1 + 24243 0.68 0.952443
Target:  5'- cGCGGCAgc--ACGCCUACC-UGGCg- -3'
miRNA:   3'- -CGCCGUauuuUGUGGGUGGuGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.