Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5609 | 5' | -65 | NC_001806.1 | + | 148087 | 0.66 | 0.543623 |
Target: 5'- aUGGGcGCCGaGG-GGGGCGcuGUCCg-- -3' miRNA: 3'- -ACCC-CGGC-CCgCCCCGCcuUAGGacc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 24880 | 0.75 | 0.155211 |
Target: 5'- gGGGGCCGuGGaggugcugGGGGCGGAGgcgggCUUGGc -3' miRNA: 3'- aCCCCGGC-CCg-------CCCCGCCUUa----GGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 33986 | 0.75 | 0.155211 |
Target: 5'- gGGGGUCgccgGGGCaGGGGCGGGggCgUGGg -3' miRNA: 3'- aCCCCGG----CCCG-CCCCGCCUuaGgACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 31378 | 0.74 | 0.162797 |
Target: 5'- gGGGGUCGGGCGcuGGGUGGuc-UCUGGc -3' miRNA: 3'- aCCCCGGCCCGC--CCCGCCuuaGGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 92901 | 0.74 | 0.16553 |
Target: 5'- cUGcGGCCgcgugguccgcgcaGGGCGGGGCGGg--CCUGGa -3' miRNA: 3'- -ACcCCGG--------------CCCGCCCCGCCuuaGGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 56679 | 0.74 | 0.170716 |
Target: 5'- gGGGGUCGGG-GGGGaCGGGggCCcGGg -3' miRNA: 3'- aCCCCGGCCCgCCCC-GCCUuaGGaCC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 86038 | 0.74 | 0.170716 |
Target: 5'- -aGGGCCgcGGGgGGGGCGGGcucGUCCccUGGg -3' miRNA: 3'- acCCCGG--CCCgCCCCGCCU---UAGG--ACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 10490 | 0.74 | 0.178977 |
Target: 5'- cUGGGGUCggGGGUGGGGuCGGAa--CUGGg -3' miRNA: 3'- -ACCCCGG--CCCGCCCC-GCCUuagGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 19101 | 0.74 | 0.178977 |
Target: 5'- uUGGGGCCGa-CGGGGUGGGggCCcGGg -3' miRNA: 3'- -ACCCCGGCccGCCCCGCCUuaGGaCC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 151447 | 0.75 | 0.150092 |
Target: 5'- gGGGGCgGcGGCGGGGCGGccgcgggcgcgcUCCUGa -3' miRNA: 3'- aCCCCGgC-CCGCCCCGCCuu----------AGGACc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 147685 | 0.75 | 0.147945 |
Target: 5'- gGGGGCCGGGgcgcgGGGGCGGGccCC-GGa -3' miRNA: 3'- aCCCCGGCCCg----CCCCGCCUuaGGaCC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 83817 | 0.75 | 0.14443 |
Target: 5'- gGGGGCgGGGuCGGcGCGGGAUCC-GGc -3' miRNA: 3'- aCCCCGgCCC-GCCcCGCCUUAGGaCC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 147784 | 0.84 | 0.037486 |
Target: 5'- gGGGGCCcgGGGCggGGGGCGGAG-CCUGGc -3' miRNA: 3'- aCCCCGG--CCCG--CCCCGCCUUaGGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 111333 | 0.81 | 0.060752 |
Target: 5'- gGGGGUgGGGCGGGGgGGGGgguauauaaggCCUGGg -3' miRNA: 3'- aCCCCGgCCCGCCCCgCCUUa----------GGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 4426 | 0.78 | 0.095319 |
Target: 5'- gGGGGuggcCCGGGCgGGGGCGGcGUCCgcccgGGg -3' miRNA: 3'- aCCCC----GGCCCG-CCCCGCCuUAGGa----CC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 25006 | 0.78 | 0.100153 |
Target: 5'- -cGGGCCGGGaCGGGGCGGGGcgCUUGu -3' miRNA: 3'- acCCCGGCCC-GCCCCGCCUUa-GGACc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 25539 | 0.76 | 0.127975 |
Target: 5'- cUGGGGCCGGGgagggcUGGGGCcggGGAGggCUGGg -3' miRNA: 3'- -ACCCCGGCCC------GCCCCG---CCUUagGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 25587 | 0.76 | 0.127975 |
Target: 5'- cUGGGGCCGGGgagggcUGGGGCcggGGAGggCUGGg -3' miRNA: 3'- -ACCCCGGCCC------GCCCCG---CCUUagGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 151288 | 0.76 | 0.137628 |
Target: 5'- cGGGGCCgggGGGCGGcGGCGGugggCCgGGc -3' miRNA: 3'- aCCCCGG---CCCGCC-CCGCCuua-GGaCC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 10391 | 0.75 | 0.140991 |
Target: 5'- gGGGGgCGGGgGGaGGCGGGAgCCgGGg -3' miRNA: 3'- aCCCCgGCCCgCC-CCGCCUUaGGaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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