Results 21 - 40 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5609 | 5' | -65 | NC_001806.1 | + | 147637 | 0.66 | 0.506784 |
Target: 5'- cUGGGGCacaCGGcgcgcguccGCGGGGCGGGcggCC-GGc -3' miRNA: 3'- -ACCCCG---GCC---------CGCCCCGCCUua-GGaCC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 9335 | 0.66 | 0.499541 |
Target: 5'- gUGGGGCCucGGGaUGGGGCgccuuaccagaagacGGAcgaaucggaggCCUGGg -3' miRNA: 3'- -ACCCCGG--CCC-GCCCCG---------------CCUua---------GGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 133341 | 0.66 | 0.497738 |
Target: 5'- cUGGaGCCaGGCGGGaGUGuGGUUCUGGa -3' miRNA: 3'- -ACCcCGGcCCGCCC-CGCcUUAGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 25953 | 0.66 | 0.497738 |
Target: 5'- cGGGGCCgcgGGaGCGGGG-GGAGgagCggGGg -3' miRNA: 3'- aCCCCGG---CC-CGCCCCgCCUUa--GgaCC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 48912 | 0.66 | 0.497738 |
Target: 5'- gGGGGCUGGG-GcGGCGGGuagCCUucgcGGg -3' miRNA: 3'- aCCCCGGCCCgCcCCGCCUua-GGA----CC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 34267 | 0.66 | 0.497738 |
Target: 5'- gGGGGCUuauaugugGGGUcccgGGGGCGGGAUg--GGg -3' miRNA: 3'- aCCCCGG--------CCCG----CCCCGCCUUAggaCC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 77249 | 0.66 | 0.496837 |
Target: 5'- gGGGGCCuguuGGCGGaauucgacgcgguGGcCGGGGaCCUGGc -3' miRNA: 3'- aCCCCGGc---CCGCC-------------CC-GCCUUaGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 22437 | 0.67 | 0.488764 |
Target: 5'- cUGGGGCCuGGCGcacgcGGCGGccgCCgUGGc -3' miRNA: 3'- -ACCCCGGcCCGCc----CCGCCuuaGG-ACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 147487 | 0.67 | 0.488764 |
Target: 5'- gGGGaGCgGGGCggcgccggagGGGGCGGcg-CCgcgGGa -3' miRNA: 3'- aCCC-CGgCCCG----------CCCCGCCuuaGGa--CC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 45511 | 0.67 | 0.488764 |
Target: 5'- gUGGGGUgagGGGUGGGGgUGGAggguGUCCcaGGa -3' miRNA: 3'- -ACCCCGg--CCCGCCCC-GCCU----UAGGa-CC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 55583 | 0.67 | 0.487871 |
Target: 5'- uUGGGGUCGGGgGuggacguGGGgGGGcUUUUGGg -3' miRNA: 3'- -ACCCCGGCCCgC-------CCCgCCUuAGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 46811 | 0.67 | 0.479867 |
Target: 5'- cGGGGaCCGGGacugGGuGGCGGGGgg-UGGg -3' miRNA: 3'- aCCCC-GGCCCg---CC-CCGCCUUaggACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 42005 | 0.67 | 0.471051 |
Target: 5'- aGGGcugcuccguGCUGGccGCGGGGuUGGggUCgUGGg -3' miRNA: 3'- aCCC---------CGGCC--CGCCCC-GCCuuAGgACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 4821 | 0.67 | 0.462317 |
Target: 5'- gGGGGuCCGGggcggcgaggccGCGGGGuCGGGcgUCgGGa -3' miRNA: 3'- aCCCC-GGCC------------CGCCCC-GCCUuaGGaCC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 109537 | 0.67 | 0.462317 |
Target: 5'- cGGGaGCCGGG-GGaGGUGcg--CCUGGg -3' miRNA: 3'- aCCC-CGGCCCgCC-CCGCcuuaGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 89779 | 0.67 | 0.453669 |
Target: 5'- cGGGGCgugggagGGGCuGGGGCGGA--CC-GGc -3' miRNA: 3'- aCCCCGg------CCCG-CCCCGCCUuaGGaCC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 29695 | 0.67 | 0.453669 |
Target: 5'- gGcGGGCCGGGgagGGGGCGuAA-CCUGa -3' miRNA: 3'- aC-CCCGGCCCg--CCCCGCcUUaGGACc -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 14056 | 0.67 | 0.453669 |
Target: 5'- gGGGGCCGGG-GccaCGGAuuUCCUGGu -3' miRNA: 3'- aCCCCGGCCCgCcccGCCUu-AGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 55541 | 0.67 | 0.453669 |
Target: 5'- gUGGGGCgGcccgacuuGGCgGGGGUGGuguuguUCUUGGg -3' miRNA: 3'- -ACCCCGgC--------CCG-CCCCGCCuu----AGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 15857 | 0.68 | 0.436641 |
Target: 5'- uUGGGGCCGcGG-GGGGCcgagaacaaGGAcgcGUUgUGGa -3' miRNA: 3'- -ACCCCGGC-CCgCCCCG---------CCU---UAGgACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home