miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 147637 0.66 0.506784
Target:  5'- cUGGGGCacaCGGcgcgcguccGCGGGGCGGGcggCC-GGc -3'
miRNA:   3'- -ACCCCG---GCC---------CGCCCCGCCUua-GGaCC- -5'
5609 5' -65 NC_001806.1 + 9335 0.66 0.499541
Target:  5'- gUGGGGCCucGGGaUGGGGCgccuuaccagaagacGGAcgaaucggaggCCUGGg -3'
miRNA:   3'- -ACCCCGG--CCC-GCCCCG---------------CCUua---------GGACC- -5'
5609 5' -65 NC_001806.1 + 133341 0.66 0.497738
Target:  5'- cUGGaGCCaGGCGGGaGUGuGGUUCUGGa -3'
miRNA:   3'- -ACCcCGGcCCGCCC-CGCcUUAGGACC- -5'
5609 5' -65 NC_001806.1 + 25953 0.66 0.497738
Target:  5'- cGGGGCCgcgGGaGCGGGG-GGAGgagCggGGg -3'
miRNA:   3'- aCCCCGG---CC-CGCCCCgCCUUa--GgaCC- -5'
5609 5' -65 NC_001806.1 + 48912 0.66 0.497738
Target:  5'- gGGGGCUGGG-GcGGCGGGuagCCUucgcGGg -3'
miRNA:   3'- aCCCCGGCCCgCcCCGCCUua-GGA----CC- -5'
5609 5' -65 NC_001806.1 + 34267 0.66 0.497738
Target:  5'- gGGGGCUuauaugugGGGUcccgGGGGCGGGAUg--GGg -3'
miRNA:   3'- aCCCCGG--------CCCG----CCCCGCCUUAggaCC- -5'
5609 5' -65 NC_001806.1 + 77249 0.66 0.496837
Target:  5'- gGGGGCCuguuGGCGGaauucgacgcgguGGcCGGGGaCCUGGc -3'
miRNA:   3'- aCCCCGGc---CCGCC-------------CC-GCCUUaGGACC- -5'
5609 5' -65 NC_001806.1 + 22437 0.67 0.488764
Target:  5'- cUGGGGCCuGGCGcacgcGGCGGccgCCgUGGc -3'
miRNA:   3'- -ACCCCGGcCCGCc----CCGCCuuaGG-ACC- -5'
5609 5' -65 NC_001806.1 + 147487 0.67 0.488764
Target:  5'- gGGGaGCgGGGCggcgccggagGGGGCGGcg-CCgcgGGa -3'
miRNA:   3'- aCCC-CGgCCCG----------CCCCGCCuuaGGa--CC- -5'
5609 5' -65 NC_001806.1 + 45511 0.67 0.488764
Target:  5'- gUGGGGUgagGGGUGGGGgUGGAggguGUCCcaGGa -3'
miRNA:   3'- -ACCCCGg--CCCGCCCC-GCCU----UAGGa-CC- -5'
5609 5' -65 NC_001806.1 + 55583 0.67 0.487871
Target:  5'- uUGGGGUCGGGgGuggacguGGGgGGGcUUUUGGg -3'
miRNA:   3'- -ACCCCGGCCCgC-------CCCgCCUuAGGACC- -5'
5609 5' -65 NC_001806.1 + 46811 0.67 0.479867
Target:  5'- cGGGGaCCGGGacugGGuGGCGGGGgg-UGGg -3'
miRNA:   3'- aCCCC-GGCCCg---CC-CCGCCUUaggACC- -5'
5609 5' -65 NC_001806.1 + 42005 0.67 0.471051
Target:  5'- aGGGcugcuccguGCUGGccGCGGGGuUGGggUCgUGGg -3'
miRNA:   3'- aCCC---------CGGCC--CGCCCC-GCCuuAGgACC- -5'
5609 5' -65 NC_001806.1 + 4821 0.67 0.462317
Target:  5'- gGGGGuCCGGggcggcgaggccGCGGGGuCGGGcgUCgGGa -3'
miRNA:   3'- aCCCC-GGCC------------CGCCCC-GCCUuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 109537 0.67 0.462317
Target:  5'- cGGGaGCCGGG-GGaGGUGcg--CCUGGg -3'
miRNA:   3'- aCCC-CGGCCCgCC-CCGCcuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 89779 0.67 0.453669
Target:  5'- cGGGGCgugggagGGGCuGGGGCGGA--CC-GGc -3'
miRNA:   3'- aCCCCGg------CCCG-CCCCGCCUuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 29695 0.67 0.453669
Target:  5'- gGcGGGCCGGGgagGGGGCGuAA-CCUGa -3'
miRNA:   3'- aC-CCCGGCCCg--CCCCGCcUUaGGACc -5'
5609 5' -65 NC_001806.1 + 14056 0.67 0.453669
Target:  5'- gGGGGCCGGG-GccaCGGAuuUCCUGGu -3'
miRNA:   3'- aCCCCGGCCCgCcccGCCUu-AGGACC- -5'
5609 5' -65 NC_001806.1 + 55541 0.67 0.453669
Target:  5'- gUGGGGCgGcccgacuuGGCgGGGGUGGuguuguUCUUGGg -3'
miRNA:   3'- -ACCCCGgC--------CCG-CCCCGCCuu----AGGACC- -5'
5609 5' -65 NC_001806.1 + 15857 0.68 0.436641
Target:  5'- uUGGGGCCGcGG-GGGGCcgagaacaaGGAcgcGUUgUGGa -3'
miRNA:   3'- -ACCCCGGC-CCgCCCCG---------CCU---UAGgACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.