miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 107924 1.14 0.001855
Target:  5'- uGGUGCGCACCCAAAACCAGCGCGACCu -3'
miRNA:   3'- -CCACGCGUGGGUUUUGGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 116980 0.86 0.122554
Target:  5'- gGGUGUGCACCUuuGA-CGGCGCGGCCg -3'
miRNA:   3'- -CCACGCGUGGGuuUUgGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 10705 0.82 0.198877
Target:  5'- gGGgggGCGUACgCCAucGCCAGCGgGACCg -3'
miRNA:   3'- -CCa--CGCGUG-GGUuuUGGUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 56621 0.82 0.219505
Target:  5'- cGGgccGCGCgACCCu-GGCCGGUGCGACCu -3'
miRNA:   3'- -CCa--CGCG-UGGGuuUUGGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 41501 0.8 0.25998
Target:  5'- -aUGCGgGCCCAgucgucccAGGCCAGCGCGGCa -3'
miRNA:   3'- ccACGCgUGGGU--------UUUGGUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 33593 0.8 0.279112
Target:  5'- cGGgcacGCGCGCCCuuaauGGACCGGCGCGgggcgggggGCCg -3'
miRNA:   3'- -CCa---CGCGUGGGu----UUUGGUCGCGC---------UGG- -5'
5611 3' -55.1 NC_001806.1 + 76507 0.78 0.335555
Target:  5'- uGGUGCGCGCCaaacAgCAGCGCG-CCg -3'
miRNA:   3'- -CCACGCGUGGguuuUgGUCGCGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 95311 0.78 0.343169
Target:  5'- cGGcgGaCGCGCCCAAGGgCGGCGCgGGCCc -3'
miRNA:   3'- -CCa-C-GCGUGGGUUUUgGUCGCG-CUGG- -5'
5611 3' -55.1 NC_001806.1 + 6115 0.78 0.350908
Target:  5'- --gGCGCACauaAAGGcCCGGCGCGACCg -3'
miRNA:   3'- ccaCGCGUGgg-UUUU-GGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 24684 0.78 0.35877
Target:  5'- cGGUGCGCGCCgGcccGGCCcgguGGCGCgGGCCg -3'
miRNA:   3'- -CCACGCGUGGgUu--UUGG----UCGCG-CUGG- -5'
5611 3' -55.1 NC_001806.1 + 6879 0.78 0.366753
Target:  5'- gGGUGUgGCACaucgaAGAACCGGCGgGACCg -3'
miRNA:   3'- -CCACG-CGUGgg---UUUUGGUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 50207 0.77 0.39143
Target:  5'- gGGUGCGCGCgCugcuGGACCGcgacugucGCGUGGCCg -3'
miRNA:   3'- -CCACGCGUGgGu---UUUGGU--------CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 1618 0.77 0.408471
Target:  5'- --gGCGCGCCCAGGccCCAGCGCGcGCa -3'
miRNA:   3'- ccaCGCGUGGGUUUu-GGUCGCGC-UGg -5'
5611 3' -55.1 NC_001806.1 + 74067 0.76 0.434882
Target:  5'- aGGUGCGgACCCAGGcCCGucGgGCGAUCg -3'
miRNA:   3'- -CCACGCgUGGGUUUuGGU--CgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 4392 0.76 0.434882
Target:  5'- --cGC-CGCCCGGGGCUugGGCGCGGCCu -3'
miRNA:   3'- ccaCGcGUGGGUUUUGG--UCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 147353 0.76 0.461327
Target:  5'- gGGUGCGUcgccgcccucuugGCCCcu-GCCGGCGCGAg- -3'
miRNA:   3'- -CCACGCG-------------UGGGuuuUGGUCGCGCUgg -5'
5611 3' -55.1 NC_001806.1 + 136347 0.76 0.462254
Target:  5'- --aGCGCcagcucaaaaaACCCGGGGCCGGCGCGcuCCg -3'
miRNA:   3'- ccaCGCG-----------UGGGUUUUGGUCGCGCu-GG- -5'
5611 3' -55.1 NC_001806.1 + 22129 0.76 0.471578
Target:  5'- uGGgGgGCGCCCGAGGCggaggaGGCGCGACg -3'
miRNA:   3'- -CCaCgCGUGGGUUUUGg-----UCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 22777 0.76 0.471578
Target:  5'- gGGcGcCGCGCCCAGgccGGCC-GCGUGGCCg -3'
miRNA:   3'- -CCaC-GCGUGGGUU---UUGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 135073 0.75 0.480997
Target:  5'- gGGgacGCGCcggGCCgGAAAUCGGCGcCGACCg -3'
miRNA:   3'- -CCa--CGCG---UGGgUUUUGGUCGC-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.