miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 5' -54.5 NC_001806.1 + 22047 0.66 0.926992
Target:  5'- -cGGGGaGCCGUGgcccgGCGCcGgGCc -3'
miRNA:   3'- caCCCC-CGGCACaaauaCGCGaUgUG- -5'
5611 5' -54.5 NC_001806.1 + 9192 0.66 0.921431
Target:  5'- -cGGGGGUCGcGggUGUG-GCgaggGCGCg -3'
miRNA:   3'- caCCCCCGGCaCaaAUACgCGa---UGUG- -5'
5611 5' -54.5 NC_001806.1 + 2834 0.66 0.91562
Target:  5'- -cGGGGG-CGUGgagggggGCGCggGCGCg -3'
miRNA:   3'- caCCCCCgGCACaaaua--CGCGa-UGUG- -5'
5611 5' -54.5 NC_001806.1 + 99726 0.67 0.90956
Target:  5'- -gGGGGcGCUGUGUggUGggggGCGaUACACg -3'
miRNA:   3'- caCCCC-CGGCACAa-AUa---CGCgAUGUG- -5'
5611 5' -54.5 NC_001806.1 + 66941 0.67 0.90956
Target:  5'- cGUGGGGGaagacgugCGUGUgaaccaugGCGCgcagACACu -3'
miRNA:   3'- -CACCCCCg-------GCACAaaua----CGCGa---UGUG- -5'
5611 5' -54.5 NC_001806.1 + 50587 0.67 0.903254
Target:  5'- cUGGGcGCUGcgGUgUAcGCGCUGCACa -3'
miRNA:   3'- cACCCcCGGCa-CAaAUaCGCGAUGUG- -5'
5611 5' -54.5 NC_001806.1 + 19490 0.67 0.896703
Target:  5'- -aGGGGGCgGgaagGgcgcuUGCGCUuGCGCg -3'
miRNA:   3'- caCCCCCGgCa---Caaau-ACGCGA-UGUG- -5'
5611 5' -54.5 NC_001806.1 + 30868 0.67 0.896703
Target:  5'- -cGGGGGCCGaGgaaGUGUGCccggaagACGCg -3'
miRNA:   3'- caCCCCCGGCaCaaaUACGCGa------UGUG- -5'
5611 5' -54.5 NC_001806.1 + 71825 0.68 0.875621
Target:  5'- -gGGGGGUCGguaucGUgcAUGCGCUcguCGCu -3'
miRNA:   3'- caCCCCCGGCa----CAaaUACGCGAu--GUG- -5'
5611 5' -54.5 NC_001806.1 + 32200 0.68 0.868133
Target:  5'- -cGGGGGaCGUGggguugGUGUGCaaagGCACg -3'
miRNA:   3'- caCCCCCgGCACaaa---UACGCGa---UGUG- -5'
5611 5' -54.5 NC_001806.1 + 25663 0.68 0.84436
Target:  5'- -aGGGGGCgGUGgugUguagcaggagcgGUGUGUUGCGCc -3'
miRNA:   3'- caCCCCCGgCACaa-A------------UACGCGAUGUG- -5'
5611 5' -54.5 NC_001806.1 + 22568 0.69 0.824028
Target:  5'- -cGGGGGCCGcgGggagccccgGCGCcgGCGCa -3'
miRNA:   3'- caCCCCCGGCa-Caaaua----CGCGa-UGUG- -5'
5611 5' -54.5 NC_001806.1 + 110223 0.7 0.778438
Target:  5'- gGUGGGGGCCGaaccggacacagGcaaccccgacGUGCGUUGCACa -3'
miRNA:   3'- -CACCCCCGGCa-----------Caaa-------UACGCGAUGUG- -5'
5611 5' -54.5 NC_001806.1 + 84443 0.7 0.772713
Target:  5'- -cGGGGGCCG-GUUUGUGaGcCUGCu- -3'
miRNA:   3'- caCCCCCGGCaCAAAUACgC-GAUGug -5'
5611 5' -54.5 NC_001806.1 + 22383 0.7 0.763069
Target:  5'- cGUGGcgcGGGCCGUGccccaccUGgGCUACGCc -3'
miRNA:   3'- -CACC---CCCGGCACaaau---ACgCGAUGUG- -5'
5611 5' -54.5 NC_001806.1 + 37654 0.71 0.733446
Target:  5'- --aGGGGUCGUGcaugaccUGUGCGCUGCGg -3'
miRNA:   3'- cacCCCCGGCACaa-----AUACGCGAUGUg -5'
5611 5' -54.5 NC_001806.1 + 55290 0.71 0.723375
Target:  5'- cGUGGGGGuCCGUuagGUUggggGCGCUgucguACACc -3'
miRNA:   3'- -CACCCCC-GGCA---CAAaua-CGCGA-----UGUG- -5'
5611 5' -54.5 NC_001806.1 + 131291 0.71 0.702996
Target:  5'- cGUGGGGGCgcUGUU--UGCGC-ACGCa -3'
miRNA:   3'- -CACCCCCGgcACAAauACGCGaUGUG- -5'
5611 5' -54.5 NC_001806.1 + 25418 0.71 0.702996
Target:  5'- -cGaGGGGCgGUGgugGUGCGCggGCGCc -3'
miRNA:   3'- caC-CCCCGgCACaaaUACGCGa-UGUG- -5'
5611 5' -54.5 NC_001806.1 + 99485 0.72 0.671983
Target:  5'- -cGGcgcGGGCCGUGUcaacguccacGUGUGCUGCGCu -3'
miRNA:   3'- caCC---CCCGGCACAaa--------UACGCGAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.