miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5612 3' -63.1 NC_001806.1 + 85218 0.66 0.592736
Target:  5'- aUCCUGGCCuucgugCAGCAGAUCaaCACGauauucgagcaucgcGCCUUc -3'
miRNA:   3'- -AGGACCGG------GUCGUCUGG--GUGC---------------CGGAG- -5'
5612 3' -63.1 NC_001806.1 + 65628 0.66 0.588814
Target:  5'- --gUGGCCgugGGCgagagGGGCCCcgGCGGCCUCc -3'
miRNA:   3'- aggACCGGg--UCG-----UCUGGG--UGCCGGAG- -5'
5612 3' -63.1 NC_001806.1 + 120370 0.66 0.588814
Target:  5'- cUCCcGGCCCGcuuuGCcGACuCCgACGGCCa- -3'
miRNA:   3'- -AGGaCCGGGU----CGuCUG-GG-UGCCGGag -5'
5612 3' -63.1 NC_001806.1 + 26982 0.66 0.588814
Target:  5'- cUCgugGGCCCgcgAGCGGGCCgAcCGGgCUCg -3'
miRNA:   3'- aGGa--CCGGG---UCGUCUGGgU-GCCgGAG- -5'
5612 3' -63.1 NC_001806.1 + 54777 0.66 0.588814
Target:  5'- -gUUGGCCgCGGCAG-CaCCAgGGCCa- -3'
miRNA:   3'- agGACCGG-GUCGUCuG-GGUgCCGGag -5'
5612 3' -63.1 NC_001806.1 + 37535 0.66 0.587834
Target:  5'- gCCgUGGgcgaccaagguuuCCCAGgAGACCCGucUGGUCUCg -3'
miRNA:   3'- aGG-ACC-------------GGGUCgUCUGGGU--GCCGGAG- -5'
5612 3' -63.1 NC_001806.1 + 121433 0.66 0.57903
Target:  5'- cCCgggGGCCUGGUGGcACCUccccaGCGGCCa- -3'
miRNA:   3'- aGGa--CCGGGUCGUC-UGGG-----UGCCGGag -5'
5612 3' -63.1 NC_001806.1 + 90892 0.66 0.57903
Target:  5'- gCCgUGGCCCGcGCGGccGCCCACcuGGCgUUu -3'
miRNA:   3'- aGG-ACCGGGU-CGUC--UGGGUG--CCGgAG- -5'
5612 3' -63.1 NC_001806.1 + 133304 0.66 0.57903
Target:  5'- gCCUGGCCCucgagGGCGucuacACCCACGcagucGCCUg -3'
miRNA:   3'- aGGACCGGG-----UCGUc----UGGGUGC-----CGGAg -5'
5612 3' -63.1 NC_001806.1 + 113155 0.66 0.575126
Target:  5'- gCCUGGCCCacgGGCGGGUCCGaugggucgcggaaGGCCa- -3'
miRNA:   3'- aGGACCGGG---UCGUCUGGGUg------------CCGGag -5'
5612 3' -63.1 NC_001806.1 + 45592 0.66 0.569281
Target:  5'- uUCUUGGCCCcuggggauuGGuUAGACCCAUGGgUUg -3'
miRNA:   3'- -AGGACCGGG---------UC-GUCUGGGUGCCgGAg -5'
5612 3' -63.1 NC_001806.1 + 74869 0.66 0.569281
Target:  5'- gUCCUGGCgacCCuGCGGGCCUcccugccgGCGGgCUg -3'
miRNA:   3'- -AGGACCG---GGuCGUCUGGG--------UGCCgGAg -5'
5612 3' -63.1 NC_001806.1 + 20392 0.66 0.569281
Target:  5'- gUCCggcgGGCgggaCCGGgGGGCCCggggACGGCCa- -3'
miRNA:   3'- -AGGa---CCG----GGUCgUCUGGG----UGCCGGag -5'
5612 3' -63.1 NC_001806.1 + 2778 0.66 0.569281
Target:  5'- gCCUGcGCCgCGGCGG-CCCGgGGCg-- -3'
miRNA:   3'- aGGAC-CGG-GUCGUCuGGGUgCCGgag -5'
5612 3' -63.1 NC_001806.1 + 68378 0.66 0.569281
Target:  5'- aCCUGuGCgcgcuCCAcCGGGCCCACgGGCUUCc -3'
miRNA:   3'- aGGAC-CG-----GGUcGUCUGGGUG-CCGGAG- -5'
5612 3' -63.1 NC_001806.1 + 31874 0.66 0.569281
Target:  5'- gCCUGcccGCCCGGaCuGACCU--GGCCUCu -3'
miRNA:   3'- aGGAC---CGGGUC-GuCUGGGugCCGGAG- -5'
5612 3' -63.1 NC_001806.1 + 68100 0.66 0.569281
Target:  5'- gCCgGGCgUcauGGCAGA-CCGCGGUCUCc -3'
miRNA:   3'- aGGaCCGgG---UCGUCUgGGUGCCGGAG- -5'
5612 3' -63.1 NC_001806.1 + 24300 0.66 0.568309
Target:  5'- -gCUGGCCggCGGCgcgGGACCUGCgccgcacggugcuGGCCUCg -3'
miRNA:   3'- agGACCGG--GUCG---UCUGGGUG-------------CCGGAG- -5'
5612 3' -63.1 NC_001806.1 + 23932 0.66 0.559574
Target:  5'- aCCUGGCCggCGGCgGGGCCUgggGgGGCCg- -3'
miRNA:   3'- aGGACCGG--GUCG-UCUGGG---UgCCGGag -5'
5612 3' -63.1 NC_001806.1 + 17201 0.66 0.559574
Target:  5'- aCCguagGGCCCuuaaauuuuuagAGCAGcCCCcgcguCGGCCUg -3'
miRNA:   3'- aGGa---CCGGG------------UCGUCuGGGu----GCCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.