miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5612 5' -52.2 NC_001806.1 + 35282 0.66 0.987707
Target:  5'- -cGugGCuuugGGGCGCAUccauggcuucggagGCGGCGCa -3'
miRNA:   3'- gaCugCGcaa-CCCGUGUGa-------------UGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 41929 0.66 0.987707
Target:  5'- uUGACGUacuccccgauauucaGUUGGGCGCGC----ACGUg -3'
miRNA:   3'- gACUGCG---------------CAACCCGUGUGauguUGCG- -5'
5612 5' -52.2 NC_001806.1 + 78672 0.66 0.98708
Target:  5'- gCUGGCGgcaGUgcuccUGGGCGCGCccgucguCGugGCg -3'
miRNA:   3'- -GACUGCg--CA-----ACCCGUGUGau-----GUugCG- -5'
5612 5' -52.2 NC_001806.1 + 91755 0.66 0.985402
Target:  5'- -cGACGUGcUGGGaa-ACUACGcCGCc -3'
miRNA:   3'- gaCUGCGCaACCCgugUGAUGUuGCG- -5'
5612 5' -52.2 NC_001806.1 + 14383 0.66 0.985402
Target:  5'- gCUGGgGUGa-GGGgACACUGgGGCGUg -3'
miRNA:   3'- -GACUgCGCaaCCCgUGUGAUgUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 46625 0.66 0.984868
Target:  5'- -cGACGCGgccacggcgacucgaGGGCGuuCUGCGGCGUc -3'
miRNA:   3'- gaCUGCGCaa-------------CCCGUguGAUGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 2837 0.66 0.983563
Target:  5'- -gGGCGUGgagGGGgGCGCg--GGCGCg -3'
miRNA:   3'- gaCUGCGCaa-CCCgUGUGaugUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 62841 0.66 0.983563
Target:  5'- -cGAgGCGgcggUGGGCAU----CAGCGCg -3'
miRNA:   3'- gaCUgCGCa---ACCCGUGugauGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 95681 0.66 0.982979
Target:  5'- cCUGACgGCGggcgcGGGCACggucaucgacaaccGCU-CGGCGCc -3'
miRNA:   3'- -GACUG-CGCaa---CCCGUG--------------UGAuGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 34309 0.66 0.981554
Target:  5'- -cGGCGgGggGcGGCGCGCcggACGggGCGCu -3'
miRNA:   3'- gaCUGCgCaaC-CCGUGUGa--UGU--UGCG- -5'
5612 5' -52.2 NC_001806.1 + 89771 0.66 0.981344
Target:  5'- aUGACGCGcgGGGCgugggagGgGCUGgGGCGg -3'
miRNA:   3'- gACUGCGCaaCCCG-------UgUGAUgUUGCg -5'
5612 5' -52.2 NC_001806.1 + 84130 0.66 0.979366
Target:  5'- cCUGGgaaGCGcaucgcgGGGCACGCacgcGCGACGUg -3'
miRNA:   3'- -GACUg--CGCaa-----CCCGUGUGa---UGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 106498 0.67 0.976992
Target:  5'- -cGACGUGgcccgUGGGCAUcuggACGACGg -3'
miRNA:   3'- gaCUGCGCa----ACCCGUGuga-UGUUGCg -5'
5612 5' -52.2 NC_001806.1 + 95455 0.67 0.976992
Target:  5'- -aGACGUGggGGG-ACAUcGCcACGCa -3'
miRNA:   3'- gaCUGCGCaaCCCgUGUGaUGuUGCG- -5'
5612 5' -52.2 NC_001806.1 + 121807 0.67 0.974422
Target:  5'- -aGAgGuCGUcgGGGgACGgUGCGGCGCg -3'
miRNA:   3'- gaCUgC-GCAa-CCCgUGUgAUGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 12164 0.67 0.974422
Target:  5'- -gGGCGaCG-UGGGCACGCgguCAcCGUg -3'
miRNA:   3'- gaCUGC-GCaACCCGUGUGau-GUuGCG- -5'
5612 5' -52.2 NC_001806.1 + 76846 0.67 0.974422
Target:  5'- --uACGCGacaGGGCGCGCgccUGCAgGCGCu -3'
miRNA:   3'- gacUGCGCaa-CCCGUGUG---AUGU-UGCG- -5'
5612 5' -52.2 NC_001806.1 + 94152 0.67 0.974422
Target:  5'- gCUGaACGCGcuucaGGuGCggGCGCUGCGGCGUc -3'
miRNA:   3'- -GAC-UGCGCaa---CC-CG--UGUGAUGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 148140 0.67 0.974422
Target:  5'- -aGACGCcccgcccgucacGggGGGCGCG--GCGGCGCc -3'
miRNA:   3'- gaCUGCG------------CaaCCCGUGUgaUGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 94808 0.67 0.974422
Target:  5'- -gGACGCGggGGGCGacggGCAGCc- -3'
miRNA:   3'- gaCUGCGCaaCCCGUgugaUGUUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.