miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5612 5' -52.2 NC_001806.1 + 41929 0.66 0.987707
Target:  5'- uUGACGUacuccccgauauucaGUUGGGCGCGC----ACGUg -3'
miRNA:   3'- gACUGCG---------------CAACCCGUGUGauguUGCG- -5'
5612 5' -52.2 NC_001806.1 + 118998 0.71 0.866072
Target:  5'- gUGACGCGcaGGGCgucuaugacccguACGCcgugGCGGCGCu -3'
miRNA:   3'- gACUGCGCaaCCCG-------------UGUGa---UGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 1851 0.71 0.866837
Target:  5'- -cGGCGCGUcgGGGUACAg-GC-GCGCg -3'
miRNA:   3'- gaCUGCGCAa-CCCGUGUgaUGuUGCG- -5'
5612 5' -52.2 NC_001806.1 + 147740 0.71 0.866837
Target:  5'- -cGGcCGCGcggGGGCGCGCggguccCGACGCg -3'
miRNA:   3'- gaCU-GCGCaa-CCCGUGUGau----GUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 76391 0.71 0.866837
Target:  5'- -gGugGCGUgcguGGCgGCGCUGgAGCGCg -3'
miRNA:   3'- gaCugCGCAac--CCG-UGUGAUgUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 119499 0.71 0.866837
Target:  5'- cCUGugGCGUUgcaucgGGGCuACGCcAgGGCGCc -3'
miRNA:   3'- -GACugCGCAA------CCCG-UGUGaUgUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 98574 0.71 0.87437
Target:  5'- -gGGCGCGUucuucgaggggaUGGGCgAC-CUGgGGCGCg -3'
miRNA:   3'- gaCUGCGCA------------ACCCG-UGuGAUgUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 119859 0.71 0.87437
Target:  5'- -cGugGCGUgGGGCGg---GCGACGCg -3'
miRNA:   3'- gaCugCGCAaCCCGUgugaUGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 95285 0.7 0.881675
Target:  5'- gCUGGCGCGcauggGGGCgggggGCGCgGCgGACGCg -3'
miRNA:   3'- -GACUGCGCaa---CCCG-----UGUGaUG-UUGCG- -5'
5612 5' -52.2 NC_001806.1 + 4018 0.71 0.859084
Target:  5'- -aGcCGCGUgaucaGGGCGUACUGCuGCGCg -3'
miRNA:   3'- gaCuGCGCAa----CCCGUGUGAUGuUGCG- -5'
5612 5' -52.2 NC_001806.1 + 138402 0.71 0.851115
Target:  5'- -gGACGCG--GGGCACaugcGCUGCGAgGUg -3'
miRNA:   3'- gaCUGCGCaaCCCGUG----UGAUGUUgCG- -5'
5612 5' -52.2 NC_001806.1 + 13534 0.71 0.842939
Target:  5'- -cGGUGCGUUuaGGaGCACGCUGCGgcagGCGCg -3'
miRNA:   3'- gaCUGCGCAA--CC-CGUGUGAUGU----UGCG- -5'
5612 5' -52.2 NC_001806.1 + 50526 0.78 0.485312
Target:  5'- -cGAgGCGcUGGGCgACACcGCAGCGCg -3'
miRNA:   3'- gaCUgCGCaACCCG-UGUGaUGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 68842 0.78 0.51491
Target:  5'- gUGACGCuGUUcucGGCGCACUcCAGCGCa -3'
miRNA:   3'- gACUGCG-CAAc--CCGUGUGAuGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 100468 0.76 0.628229
Target:  5'- gCUGACGgaCGaUUGGGCACcggucaccCUGCGGCGCg -3'
miRNA:   3'- -GACUGC--GC-AACCCGUGu-------GAUGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 62319 0.75 0.659625
Target:  5'- cCUGGCGCGgagGGGguUugUcggucACAGCGCg -3'
miRNA:   3'- -GACUGCGCaa-CCCguGugA-----UGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 26803 0.74 0.701117
Target:  5'- cCUGGCGCGccu-GCGC-CUGCGACGCg -3'
miRNA:   3'- -GACUGCGCaaccCGUGuGAUGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 51403 0.74 0.721537
Target:  5'- --aGCGCGgccgUGGGCGCcuuGCgGCAGCGCu -3'
miRNA:   3'- gacUGCGCa---ACCCGUG---UGaUGUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 24073 0.73 0.771006
Target:  5'- -cGACGUGUcggcgcUGGGCGCAC-AgGGCGUg -3'
miRNA:   3'- gaCUGCGCA------ACCCGUGUGaUgUUGCG- -5'
5612 5' -52.2 NC_001806.1 + 147073 0.73 0.78055
Target:  5'- gUGGCGCGUcuuccGGGCACACUuccuCGGCccccGCg -3'
miRNA:   3'- gACUGCGCAa----CCCGUGUGAu---GUUG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.