miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5613 3' -52.4 NC_001806.1 + 78347 0.66 0.983441
Target:  5'- aGCGcgGCGcCGCGCUGGGaa---AGCu -3'
miRNA:   3'- cCGUaaUGU-GCGCGACCCgauagUCG- -5'
5613 3' -52.4 NC_001806.1 + 3449 0.66 0.983441
Target:  5'- aGGCAcucgacggcCACGCGgccggcCUGGGCg--CGGCg -3'
miRNA:   3'- -CCGUaau------GUGCGC------GACCCGauaGUCG- -5'
5613 3' -52.4 NC_001806.1 + 52596 0.66 0.983441
Target:  5'- gGGCAU--CGCGCGggGGGUgggaccUGUCGGg -3'
miRNA:   3'- -CCGUAauGUGCGCgaCCCG------AUAGUCg -5'
5613 3' -52.4 NC_001806.1 + 112703 0.66 0.983441
Target:  5'- cGCGcgUGCGCGCGgauCUGGuGUccAUCGGCg -3'
miRNA:   3'- cCGUa-AUGUGCGC---GACC-CGa-UAGUCG- -5'
5613 3' -52.4 NC_001806.1 + 32507 0.66 0.98141
Target:  5'- gGGUcaUugGCGUGggGGGUUA-CAGCg -3'
miRNA:   3'- -CCGuaAugUGCGCgaCCCGAUaGUCG- -5'
5613 3' -52.4 NC_001806.1 + 25643 0.66 0.98141
Target:  5'- gGGgAggGCugGgGCUGGGgaGggGGCg -3'
miRNA:   3'- -CCgUaaUGugCgCGACCCgaUagUCG- -5'
5613 3' -52.4 NC_001806.1 + 151216 0.66 0.98141
Target:  5'- aGGCGgaagGgGCGCGaggggGGGUgggagggGUCAGCc -3'
miRNA:   3'- -CCGUaa--UgUGCGCga---CCCGa------UAGUCG- -5'
5613 3' -52.4 NC_001806.1 + 62836 0.66 0.98141
Target:  5'- uGCGccgAgGCgGCGgUGGGC-AUCAGCg -3'
miRNA:   3'- cCGUaa-UgUG-CGCgACCCGaUAGUCG- -5'
5613 3' -52.4 NC_001806.1 + 49754 0.66 0.981197
Target:  5'- gGGUuUUACccguguccggauaGCGCGUUcGGGUUAUCGcGCg -3'
miRNA:   3'- -CCGuAAUG-------------UGCGCGA-CCCGAUAGU-CG- -5'
5613 3' -52.4 NC_001806.1 + 86358 0.66 0.981197
Target:  5'- gGGCAgggguCGCGCcagccacuccuccGCgGGGCgcUCGGCu -3'
miRNA:   3'- -CCGUaau--GUGCG-------------CGaCCCGauAGUCG- -5'
5613 3' -52.4 NC_001806.1 + 96460 0.66 0.980765
Target:  5'- cGGCuccgaguucccccgGCACGC-CUGGGgUcgCGGCc -3'
miRNA:   3'- -CCGuaa-----------UGUGCGcGACCCgAuaGUCG- -5'
5613 3' -52.4 NC_001806.1 + 49454 0.66 0.978966
Target:  5'- cGGCAggggggaUACcugggucccgucgACGCGC-GGGCUauuuuggggcggGUCGGCg -3'
miRNA:   3'- -CCGUa------AUG-------------UGCGCGaCCCGA------------UAGUCG- -5'
5613 3' -52.4 NC_001806.1 + 99606 0.66 0.976796
Target:  5'- cGGUAgagggGCGCGCGuCUGGGUggaaggacaUGggGGCg -3'
miRNA:   3'- -CCGUaa---UGUGCGC-GACCCG---------AUagUCG- -5'
5613 3' -52.4 NC_001806.1 + 51133 0.66 0.971393
Target:  5'- cGGgGagGCGCGCGaCcGGGCUGggaGGCc -3'
miRNA:   3'- -CCgUaaUGUGCGC-GaCCCGAUag-UCG- -5'
5613 3' -52.4 NC_001806.1 + 65614 0.66 0.971393
Target:  5'- uGGCAgUACACGUGgU-GGCcGUgGGCg -3'
miRNA:   3'- -CCGUaAUGUGCGCgAcCCGaUAgUCG- -5'
5613 3' -52.4 NC_001806.1 + 33726 0.66 0.971101
Target:  5'- cGCuugugagUGCGCGCGCc-GGCUcugcgguGUCGGCg -3'
miRNA:   3'- cCGua-----AUGUGCGCGacCCGA-------UAGUCG- -5'
5613 3' -52.4 NC_001806.1 + 22377 0.67 0.968376
Target:  5'- cGGCAgcgugGCGCGgGCcgugccccaccUGGGCUAcgccauggCGGCc -3'
miRNA:   3'- -CCGUaa---UGUGCgCG-----------ACCCGAUa-------GUCG- -5'
5613 3' -52.4 NC_001806.1 + 142101 0.67 0.968376
Target:  5'- aGGCAUcguUAgAgGCGCcgggagugGGGUcGUCGGCg -3'
miRNA:   3'- -CCGUA---AUgUgCGCGa-------CCCGaUAGUCG- -5'
5613 3' -52.4 NC_001806.1 + 42127 0.67 0.96646
Target:  5'- cGGUcggACACGCGCaggcaacugcgaucgUGGGUUAUgaacuucucCAGCg -3'
miRNA:   3'- -CCGuaaUGUGCGCG---------------ACCCGAUA---------GUCG- -5'
5613 3' -52.4 NC_001806.1 + 103151 0.67 0.964803
Target:  5'- gGGCAgcgGCAgccgcugUGCGCUGGGCcugUAGg -3'
miRNA:   3'- -CCGUaa-UGU-------GCGCGACCCGauaGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.