miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5614 5' -52.8 NC_001806.1 + 100765 0.66 0.982625
Target:  5'- gCGCGAGCUcgGCCuCGGcggCCaGUCGCc -3'
miRNA:   3'- -GUGCUUGAugCGG-GUCaa-GGaCAGCG- -5'
5614 5' -52.8 NC_001806.1 + 26991 0.66 0.982625
Target:  5'- cCGCGAGCgggccgACcggGCUCGGUUCCgg-CGCc -3'
miRNA:   3'- -GUGCUUGa-----UG---CGGGUCAAGGacaGCG- -5'
5614 5' -52.8 NC_001806.1 + 24266 0.66 0.982425
Target:  5'- uGCGAGCUGCuGCCCgccgugcAGUgcgCCgugCGCu -3'
miRNA:   3'- gUGCUUGAUG-CGGG-------UCAa--GGacaGCG- -5'
5614 5' -52.8 NC_001806.1 + 1604 0.66 0.980548
Target:  5'- aCACGGGCcgcagcggcGCGCCCAGgcCCcagCGCg -3'
miRNA:   3'- -GUGCUUGa--------UGCGGGUCaaGGacaGCG- -5'
5614 5' -52.8 NC_001806.1 + 35549 0.66 0.97829
Target:  5'- aGCGAGCcgcucggcGCGCCCGGcgCCg--CGCc -3'
miRNA:   3'- gUGCUUGa-------UGCGGGUCaaGGacaGCG- -5'
5614 5' -52.8 NC_001806.1 + 63862 0.67 0.970359
Target:  5'- gCAUGAcGCUGCGguCCCGGggCCggaGUCGUu -3'
miRNA:   3'- -GUGCU-UGAUGC--GGGUCaaGGa--CAGCG- -5'
5614 5' -52.8 NC_001806.1 + 94889 0.67 0.970063
Target:  5'- gCACGAcguguuucaggccACcACGCCCGG--CCUGUaCGCc -3'
miRNA:   3'- -GUGCU-------------UGaUGCGGGUCaaGGACA-GCG- -5'
5614 5' -52.8 NC_001806.1 + 68279 0.67 0.960542
Target:  5'- cCACGGccaaGCUGCGCgCCGccauggcggcGUUUCUGUUGUc -3'
miRNA:   3'- -GUGCU----UGAUGCG-GGU----------CAAGGACAGCG- -5'
5614 5' -52.8 NC_001806.1 + 121414 0.67 0.960542
Target:  5'- gCGCGuGCUGCGCCUugggcccgGGggCCUGgUgGCa -3'
miRNA:   3'- -GUGCuUGAUGCGGG--------UCaaGGAC-AgCG- -5'
5614 5' -52.8 NC_001806.1 + 57370 0.67 0.95287
Target:  5'- cCGgGGAC-ACgGCCCGGUggCUGUCGUu -3'
miRNA:   3'- -GUgCUUGaUG-CGGGUCAagGACAGCG- -5'
5614 5' -52.8 NC_001806.1 + 127753 0.67 0.95287
Target:  5'- gGCGGGCU--GCCgGGUgcgggCCUGUgGCg -3'
miRNA:   3'- gUGCUUGAugCGGgUCAa----GGACAgCG- -5'
5614 5' -52.8 NC_001806.1 + 135408 0.67 0.95287
Target:  5'- gCGCGAcagGCGCuCCAGgUCCUGggCGUa -3'
miRNA:   3'- -GUGCUugaUGCG-GGUCaAGGACa-GCG- -5'
5614 5' -52.8 NC_001806.1 + 108167 0.68 0.944254
Target:  5'- cCGC-AAUUGCGCCCGgGUUUCUGgcCGCc -3'
miRNA:   3'- -GUGcUUGAUGCGGGU-CAAGGACa-GCG- -5'
5614 5' -52.8 NC_001806.1 + 133767 0.68 0.939583
Target:  5'- -gUGGACUGCGCUCAucaCCUG-CGCg -3'
miRNA:   3'- guGCUUGAUGCGGGUcaaGGACaGCG- -5'
5614 5' -52.8 NC_001806.1 + 99866 0.68 0.929506
Target:  5'- cCGC-AugUGCG-CCAGUUCCUGcUGCa -3'
miRNA:   3'- -GUGcUugAUGCgGGUCAAGGACaGCG- -5'
5614 5' -52.8 NC_001806.1 + 114529 0.68 0.928444
Target:  5'- gGCGAAC-GCGCCCAauuuccccccGgcccugcgcgaCCUGUCGCg -3'
miRNA:   3'- gUGCUUGaUGCGGGU----------Caa---------GGACAGCG- -5'
5614 5' -52.8 NC_001806.1 + 83881 0.69 0.924097
Target:  5'- --aGGAUUGCGCCCGucUCCUGgacUGCa -3'
miRNA:   3'- gugCUUGAUGCGGGUcaAGGACa--GCG- -5'
5614 5' -52.8 NC_001806.1 + 124898 0.69 0.906396
Target:  5'- -cCGGACUuCGCCCuGgcCCUGcUCGCc -3'
miRNA:   3'- guGCUUGAuGCGGGuCaaGGAC-AGCG- -5'
5614 5' -52.8 NC_001806.1 + 89174 0.7 0.886517
Target:  5'- gGCGcuGGgUugGCCCGGUcggcUUCUGUUGCg -3'
miRNA:   3'- gUGC--UUgAugCGGGUCA----AGGACAGCG- -5'
5614 5' -52.8 NC_001806.1 + 17530 0.7 0.872098
Target:  5'- -cCGAuCgUGCGCaCUAGgUCCUGUCGCu -3'
miRNA:   3'- guGCUuG-AUGCG-GGUCaAGGACAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.