miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5615 3' -58.8 NC_001806.1 + 28184 0.66 0.749292
Target:  5'- aGGgGCCGGGCGccaugUCUGgGGC-GCCAu- -3'
miRNA:   3'- -UUgUGGCCCGC-----AGACaCCGaCGGUuu -5'
5615 3' -58.8 NC_001806.1 + 111547 0.66 0.749292
Target:  5'- gGugGCCGGGCGUUgggGUGGaucuuaGCCu-- -3'
miRNA:   3'- -UugUGGCCCGCAGa--CACCga----CGGuuu -5'
5615 3' -58.8 NC_001806.1 + 109462 0.66 0.749292
Target:  5'- -gUugUGGGCGUCaaGUGGCUGgCGu- -3'
miRNA:   3'- uuGugGCCCGCAGa-CACCGACgGUuu -5'
5615 3' -58.8 NC_001806.1 + 119485 0.66 0.719683
Target:  5'- --gACCGGGCGUgcggcCUGUGGCguUGCa--- -3'
miRNA:   3'- uugUGGCCCGCA-----GACACCG--ACGguuu -5'
5615 3' -58.8 NC_001806.1 + 77098 0.66 0.719683
Target:  5'- -gUACCaGGGCGUcCUG-GGC-GCCAAGa -3'
miRNA:   3'- uuGUGG-CCCGCA-GACaCCGaCGGUUU- -5'
5615 3' -58.8 NC_001806.1 + 96433 0.67 0.699547
Target:  5'- uGACGCUGGGgGUCcugGUGGC-GUCGGc -3'
miRNA:   3'- -UUGUGGCCCgCAGa--CACCGaCGGUUu -5'
5615 3' -58.8 NC_001806.1 + 145955 0.67 0.689388
Target:  5'- cAACACCca-CGUCUGUGGUgugGCCGAc -3'
miRNA:   3'- -UUGUGGcccGCAGACACCGa--CGGUUu -5'
5615 3' -58.8 NC_001806.1 + 96973 0.67 0.668934
Target:  5'- cAACGCCaaGGGgGUCUGUcGGUccacgGCCAAGu -3'
miRNA:   3'- -UUGUGG--CCCgCAGACA-CCGa----CGGUUU- -5'
5615 3' -58.8 NC_001806.1 + 151269 0.67 0.658657
Target:  5'- cACGCCGGGCG---GUGGggGCCGGGg -3'
miRNA:   3'- uUGUGGCCCGCagaCACCgaCGGUUU- -5'
5615 3' -58.8 NC_001806.1 + 38488 0.68 0.62773
Target:  5'- cAugACCGGGCuGUC---GGCUGCCGu- -3'
miRNA:   3'- -UugUGGCCCG-CAGacaCCGACGGUuu -5'
5615 3' -58.8 NC_001806.1 + 74957 0.68 0.607115
Target:  5'- cGCugCGGGCGgacaUGUgggGGCUGCUggGg -3'
miRNA:   3'- uUGugGCCCGCag--ACA---CCGACGGuuU- -5'
5615 3' -58.8 NC_001806.1 + 70821 0.68 0.607115
Target:  5'- cGCGCUGGcgGCGUCUGUcGGcCUGCUAu- -3'
miRNA:   3'- uUGUGGCC--CGCAGACA-CC-GACGGUuu -5'
5615 3' -58.8 NC_001806.1 + 127756 0.69 0.56617
Target:  5'- gGGCuGCCGGGUGcgggcCUGUGGCgGCCGu- -3'
miRNA:   3'- -UUG-UGGCCCGCa----GACACCGaCGGUuu -5'
5615 3' -58.8 NC_001806.1 + 48771 0.69 0.545952
Target:  5'- -cCACUGGG-GUCUG-GGUUGCCGGc -3'
miRNA:   3'- uuGUGGCCCgCAGACaCCGACGGUUu -5'
5615 3' -58.8 NC_001806.1 + 57739 0.7 0.496541
Target:  5'- cGCuCCGGGCGUCUGgagcGGCgggacggGCCGc- -3'
miRNA:   3'- uUGuGGCCCGCAGACa---CCGa------CGGUuu -5'
5615 3' -58.8 NC_001806.1 + 143110 0.73 0.33916
Target:  5'- cGACGCUGGGgG-C-GUGGCUGCCGGGa -3'
miRNA:   3'- -UUGUGGCCCgCaGaCACCGACGGUUU- -5'
5615 3' -58.8 NC_001806.1 + 105908 1.03 0.00281
Target:  5'- gAACACCGGGCGUCUGUGGCUGCCAAAc -3'
miRNA:   3'- -UUGUGGCCCGCAGACACCGACGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.