miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5615 5' -52 NC_001806.1 + 70143 0.66 0.989032
Target:  5'- cCCUCCucGAACCgGCCGCcCGGGg--- -3'
miRNA:   3'- -GGGGGuuUUUGG-UGGCGcGCCUaaag -5'
5615 5' -52 NC_001806.1 + 54088 0.66 0.989032
Target:  5'- -aCCCAG--GCCGCgGCGgGGAg--- -3'
miRNA:   3'- ggGGGUUuuUGGUGgCGCgCCUaaag -5'
5615 5' -52 NC_001806.1 + 76528 0.66 0.989032
Target:  5'- gCgCC-GAAGCCACCGaGCGGGUc-- -3'
miRNA:   3'- gGgGGuUUUUGGUGGCgCGCCUAaag -5'
5615 5' -52 NC_001806.1 + 33127 0.66 0.989032
Target:  5'- -gCCCG--GACCGCCGCGguCGGGg--- -3'
miRNA:   3'- ggGGGUuuUUGGUGGCGC--GCCUaaag -5'
5615 5' -52 NC_001806.1 + 55964 0.66 0.989032
Target:  5'- aCCUCCAcacGGACCACCGgaUGgGGGUgugCg -3'
miRNA:   3'- -GGGGGUu--UUUGGUGGC--GCgCCUAaa-G- -5'
5615 5' -52 NC_001806.1 + 120182 0.66 0.989032
Target:  5'- gCCCCG---ACCAaCGCGCGuGGUUg- -3'
miRNA:   3'- gGGGGUuuuUGGUgGCGCGC-CUAAag -5'
5615 5' -52 NC_001806.1 + 9734 0.66 0.989032
Target:  5'- gCCCCCAuc-ACCGCCccuaaccgcaggGCGCcguGGGUUg- -3'
miRNA:   3'- -GGGGGUuuuUGGUGG------------CGCG---CCUAAag -5'
5615 5' -52 NC_001806.1 + 56824 0.66 0.989032
Target:  5'- gCCCCCGGGcccgccaacACCGCCGCGgccaGGGc--- -3'
miRNA:   3'- -GGGGGUUUu--------UGGUGGCGCg---CCUaaag -5'
5615 5' -52 NC_001806.1 + 23465 0.66 0.989032
Target:  5'- gCCCCG--GGCCGCCGCgGCGc----- -3'
miRNA:   3'- gGGGGUuuUUGGUGGCG-CGCcuaaag -5'
5615 5' -52 NC_001806.1 + 81946 0.66 0.989032
Target:  5'- gCCUCCcGGGACCGCCggguucggcgGCGaCGGGUa-- -3'
miRNA:   3'- -GGGGGuUUUUGGUGG----------CGC-GCCUAaag -5'
5615 5' -52 NC_001806.1 + 129668 0.66 0.989032
Target:  5'- cCCgCCCG--GGCCGCCGaGCGGcccgUCu -3'
miRNA:   3'- -GG-GGGUuuUUGGUGGCgCGCCuaa-AG- -5'
5615 5' -52 NC_001806.1 + 99538 0.66 0.989032
Target:  5'- gCCCCG---GCCuCCGCGuUGGAUg-- -3'
miRNA:   3'- gGGGGUuuuUGGuGGCGC-GCCUAaag -5'
5615 5' -52 NC_001806.1 + 46280 0.66 0.987553
Target:  5'- aCUCCCAGAcGCCcCCGCGUcGAc--- -3'
miRNA:   3'- -GGGGGUUUuUGGuGGCGCGcCUaaag -5'
5615 5' -52 NC_001806.1 + 68482 0.66 0.987553
Target:  5'- gCCCCCGAccAGGCCuuCCGgGagauGGAggUCa -3'
miRNA:   3'- -GGGGGUU--UUUGGu-GGCgCg---CCUaaAG- -5'
5615 5' -52 NC_001806.1 + 7792 0.66 0.987553
Target:  5'- gCCCCCGgcuacaGGGGCCAUguugggccgccaCGCGCGGcuggUCc -3'
miRNA:   3'- -GGGGGU------UUUUGGUG------------GCGCGCCuaa-AG- -5'
5615 5' -52 NC_001806.1 + 25875 0.66 0.987553
Target:  5'- cCCCCCGcgGGCgCGCgCGCGCGc----- -3'
miRNA:   3'- -GGGGGUuuUUG-GUG-GCGCGCcuaaag -5'
5615 5' -52 NC_001806.1 + 76282 0.66 0.987553
Target:  5'- -aCCU---GGCCGCCGCcGCGGAg--- -3'
miRNA:   3'- ggGGGuuuUUGGUGGCG-CGCCUaaag -5'
5615 5' -52 NC_001806.1 + 88997 0.66 0.987553
Target:  5'- --gCCAGAAGCCGCCcgacccgaCGCGGAggacgUCg -3'
miRNA:   3'- gggGGUUUUUGGUGGc-------GCGCCUaa---AG- -5'
5615 5' -52 NC_001806.1 + 65980 0.66 0.987553
Target:  5'- aCCCUA--AACCAcCCGCGCuGGcUUUUu -3'
miRNA:   3'- gGGGGUuuUUGGU-GGCGCG-CCuAAAG- -5'
5615 5' -52 NC_001806.1 + 115121 0.66 0.987553
Target:  5'- gCgCCCAGGuGCCGCgGCGCgcagGGAUg-- -3'
miRNA:   3'- -GgGGGUUUuUGGUGgCGCG----CCUAaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.