Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5617 | 3' | -60.5 | NC_001806.1 | + | 77155 | 0.66 | 0.659363 |
Target: 5'- cGGGgGGCGCGuGGCCCAacacgcCGACCUgAg- -3' miRNA: 3'- -CUCgUUGCGC-CCGGGU------GCUGGGgUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 23721 | 0.66 | 0.679342 |
Target: 5'- -cGguGCGcCGGGCCCGC--CCCCGc- -3' miRNA: 3'- cuCguUGC-GCCCGGGUGcuGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 22641 | 0.66 | 0.688287 |
Target: 5'- cGAGC-GCGCGGuGCCCgccggguACGGCgCCGc- -3' miRNA: 3'- -CUCGuUGCGCC-CGGG-------UGCUGgGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 120842 | 0.66 | 0.659363 |
Target: 5'- cGGCAugGCgcagcuGGGaCCCcgGCGGCCCCu-- -3' miRNA: 3'- cUCGUugCG------CCC-GGG--UGCUGGGGuau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 100250 | 0.66 | 0.659363 |
Target: 5'- -cGCAcCGUGaGGCCCAUaggccacgGACCCCGc- -3' miRNA: 3'- cuCGUuGCGC-CCGGGUG--------CUGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 47341 | 0.66 | 0.669367 |
Target: 5'- uGGGCuuuAGCGCGGGCCC-CG-CgCUAUGu -3' miRNA: 3'- -CUCG---UUGCGCCCGGGuGCuGgGGUAU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 110085 | 0.66 | 0.679342 |
Target: 5'- cGGCGACGUaacacGGCCCAgaGGCCCCc-- -3' miRNA: 3'- cUCGUUGCGc----CCGGGUg-CUGGGGuau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 77522 | 0.66 | 0.669367 |
Target: 5'- cGAGUGA-GCGgaGGCCCGgGGCCCCu-- -3' miRNA: 3'- -CUCGUUgCGC--CCGGGUgCUGGGGuau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 2517 | 0.66 | 0.669367 |
Target: 5'- uGGGCGGCggggGCGGGCCCgGCGcACCgCGc- -3' miRNA: 3'- -CUCGUUG----CGCCCGGG-UGC-UGGgGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 31090 | 0.66 | 0.659363 |
Target: 5'- uGGCGACccggcuGCGGG-CCGCGGuCCCCGg- -3' miRNA: 3'- cUCGUUG------CGCCCgGGUGCU-GGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 132485 | 0.66 | 0.689279 |
Target: 5'- uGGCAuaccacgguccACGCcgcccccgGGGCCCugGcCCCCGUc -3' miRNA: 3'- cUCGU-----------UGCG--------CCCGGGugCuGGGGUAu -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 147509 | 0.66 | 0.678346 |
Target: 5'- gGGGCGGCGCcgcgggaGGGCCC--GugCCCAc- -3' miRNA: 3'- -CUCGUUGCG-------CCCGGGugCugGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 22380 | 0.66 | 0.659363 |
Target: 5'- cAGCGugGCGCGGGCCgu--GCCCCAc- -3' miRNA: 3'- cUCGU--UGCGCCCGGgugcUGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 36839 | 0.66 | 0.669367 |
Target: 5'- aGGCcguACGcCGGGCCCAC--CCCCGc- -3' miRNA: 3'- cUCGu--UGC-GCCCGGGUGcuGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 147026 | 0.66 | 0.709008 |
Target: 5'- aGGUAGCGCGugaggccGCCCGCGgggacgGCCCCGg- -3' miRNA: 3'- cUCGUUGCGCc------CGGGUGC------UGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 147714 | 0.66 | 0.669367 |
Target: 5'- aGGCGGCGCucgcacgcacGGGgCCACGGCCgCGc- -3' miRNA: 3'- cUCGUUGCG----------CCCgGGUGCUGGgGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 22557 | 0.66 | 0.679342 |
Target: 5'- -cGCGGCGCugacgGGGgCCGCGgggaGCCCCGg- -3' miRNA: 3'- cuCGUUGCG-----CCCgGGUGC----UGGGGUau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 102577 | 0.66 | 0.659363 |
Target: 5'- -cGgAGCGCGGucgcuaucGUCgGCGGCCCCGUGc -3' miRNA: 3'- cuCgUUGCGCC--------CGGgUGCUGGGGUAU- -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 3669 | 0.66 | 0.659363 |
Target: 5'- -cGcCGGCGcCGGGgcucCCCGCGGCCCCc-- -3' miRNA: 3'- cuC-GUUGC-GCCC----GGGUGCUGGGGuau -5' |
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5617 | 3' | -60.5 | NC_001806.1 | + | 7547 | 0.66 | 0.659363 |
Target: 5'- gGAGCAuACGCucGGGCCCGCGucgggaUCCAc- -3' miRNA: 3'- -CUCGU-UGCG--CCCGGGUGCug----GGGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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