miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 1518 0.7 0.446033
Target:  5'- cAGCAggGCGCGGGCgcaaaagucccuCCGCGGCCCgCGc- -3'
miRNA:   3'- cUCGU--UGCGCCCG------------GGUGCUGGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 1612 0.68 0.549571
Target:  5'- -cGCAGCgGCGcGCCCA-GGCCCCAg- -3'
miRNA:   3'- cuCGUUG-CGCcCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 2441 0.68 0.559405
Target:  5'- gGGGCcaaaGAgGCGGcCCCcgGCGGCCCCGUGg -3'
miRNA:   3'- -CUCG----UUgCGCCcGGG--UGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 2517 0.66 0.669367
Target:  5'- uGGGCGGCggggGCGGGCCCgGCGcACCgCGc- -3'
miRNA:   3'- -CUCGUUG----CGCCCGGG-UGC-UGGgGUau -5'
5617 3' -60.5 NC_001806.1 + 2665 0.7 0.42837
Target:  5'- cGGCGGcCGCGGGCgCCGCcguguggcugGGCCCCGg- -3'
miRNA:   3'- cUCGUU-GCGCCCG-GGUG----------CUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 2765 0.66 0.689279
Target:  5'- gGGGCGcGgGCGGGCCUgcgccgcgGCGGCCCgGg- -3'
miRNA:   3'- -CUCGU-UgCGCCCGGG--------UGCUGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 2811 0.68 0.549571
Target:  5'- uGGGCgGGgGCGGGCUCG-GGCCCCGg- -3'
miRNA:   3'- -CUCG-UUgCGCCCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 3133 0.85 0.050674
Target:  5'- cGGCAGCGCgGGGCCCAgGGCCCCGg- -3'
miRNA:   3'- cUCGUUGCG-CCCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 3575 0.67 0.629256
Target:  5'- aGGGCGGCGaGGaucCCCGCGGCgCCGUAc -3'
miRNA:   3'- -CUCGUUGCgCCc--GGGUGCUGgGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 3669 0.66 0.659363
Target:  5'- -cGcCGGCGcCGGGgcucCCCGCGGCCCCc-- -3'
miRNA:   3'- cuC-GUUGC-GCCC----GGGUGCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 4335 0.71 0.385268
Target:  5'- -cGCcGCGCGGGCCCggcggcgcucgauGCGGCCCgCGg- -3'
miRNA:   3'- cuCGuUGCGCCCGGG-------------UGCUGGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 4717 0.69 0.500369
Target:  5'- -cGUAGCG-GGGCCUcccguucGCGGCCCCGg- -3'
miRNA:   3'- cuCGUUGCgCCCGGG-------UGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 5505 0.67 0.649338
Target:  5'- gGAGCAGCG-GaGGCCgC-CGGCCCCc-- -3'
miRNA:   3'- -CUCGUUGCgC-CCGG-GuGCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 5675 0.71 0.402667
Target:  5'- aGGGCGG-GUGGGUCCGCG-CCCCGc- -3'
miRNA:   3'- -CUCGUUgCGCCCGGGUGCuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 5766 0.7 0.42837
Target:  5'- cGGGCAggggGCG-GGGCCCG-GGCCCCGa- -3'
miRNA:   3'- -CUCGU----UGCgCCCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 6674 0.67 0.646328
Target:  5'- gGAGCAuguCGUGGGCCCugGAaauggcggacaccuUCCUg-- -3'
miRNA:   3'- -CUCGUu--GCGCCCGGGugCU--------------GGGGuau -5'
5617 3' -60.5 NC_001806.1 + 7547 0.66 0.659363
Target:  5'- gGAGCAuACGCucGGGCCCGCGucgggaUCCAc- -3'
miRNA:   3'- -CUCGU-UGCG--CCCGGGUGCug----GGGUau -5'
5617 3' -60.5 NC_001806.1 + 11111 0.67 0.609183
Target:  5'- -uGCGcCGCGGGCCCucu-CCCCGg- -3'
miRNA:   3'- cuCGUuGCGCCCGGGugcuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 12163 0.71 0.402667
Target:  5'- gGGGCGACGUGGGCaCGCGGUCaCCGUGa -3'
miRNA:   3'- -CUCGUUGCGCCCGgGUGCUGG-GGUAU- -5'
5617 3' -60.5 NC_001806.1 + 21226 0.69 0.520414
Target:  5'- gGAGgAGgGCGGGgacgaccccgaCCACGACCCCGa- -3'
miRNA:   3'- -CUCgUUgCGCCCg----------GGUGCUGGGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.