miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 147026 0.66 0.709008
Target:  5'- aGGUAGCGCGugaggccGCCCGCGgggacgGCCCCGg- -3'
miRNA:   3'- cUCGUUGCGCc------CGGGUGC------UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 73138 0.73 0.317235
Target:  5'- cGGGCGaggACGaCGGGCCCACGGuuCCGg- -3'
miRNA:   3'- -CUCGU---UGC-GCCCGGGUGCUggGGUau -5'
5617 3' -60.5 NC_001806.1 + 30651 0.72 0.339116
Target:  5'- cGGcCAGgGUGGGCCCGgGACCCCc-- -3'
miRNA:   3'- cUC-GUUgCGCCCGGGUgCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 21502 0.72 0.346649
Target:  5'- cGGCGAC-CGGGCCC-CGGCCCgGg- -3'
miRNA:   3'- cUCGUUGcGCCCGGGuGCUGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 150976 0.72 0.346649
Target:  5'- -cGCu-CGCGGGCCCACGAgCCgCGg- -3'
miRNA:   3'- cuCGuuGCGCCCGGGUGCUgGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 38022 0.72 0.362071
Target:  5'- cGGCAGCccCGGGaccaCCGCGACCCCGa- -3'
miRNA:   3'- cUCGUUGc-GCCCg---GGUGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 56854 0.72 0.36996
Target:  5'- aGGGCGGCcgcgGCGGGCCCAcCGAUCCa--- -3'
miRNA:   3'- -CUCGUUG----CGCCCGGGU-GCUGGGguau -5'
5617 3' -60.5 NC_001806.1 + 89527 0.71 0.377964
Target:  5'- cGAGCugcuGCGCGGcGCCCcggccgGCGGCCCgGUu -3'
miRNA:   3'- -CUCGu---UGCGCC-CGGG------UGCUGGGgUAu -5'
5617 3' -60.5 NC_001806.1 + 45288 0.71 0.377964
Target:  5'- cGGGaGACGCGGGCCCGCGcggggagccGCCCgGc- -3'
miRNA:   3'- -CUCgUUGCGCCCGGGUGC---------UGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 125841 0.73 0.317235
Target:  5'- -cGCGcCGCGGGCCCcCGGCCgCCGc- -3'
miRNA:   3'- cuCGUuGCGCCCGGGuGCUGG-GGUau -5'
5617 3' -60.5 NC_001806.1 + 49361 0.73 0.317235
Target:  5'- cGGCAGCGCcccGGGCCCgauGCGGCCCg--- -3'
miRNA:   3'- cUCGUUGCG---CCCGGG---UGCUGGGguau -5'
5617 3' -60.5 NC_001806.1 + 56687 0.74 0.283166
Target:  5'- gGGGgGACGgGGGCCCGgGAaCCCCGg- -3'
miRNA:   3'- -CUCgUUGCgCCCGGGUgCU-GGGGUau -5'
5617 3' -60.5 NC_001806.1 + 3133 0.85 0.050674
Target:  5'- cGGCAGCGCgGGGCCCAgGGCCCCGg- -3'
miRNA:   3'- cUCGUUGCG-CCCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 113847 0.8 0.111272
Target:  5'- -uGCGGCGCGcGGCCCugGACCgCCAUc -3'
miRNA:   3'- cuCGUUGCGC-CCGGGugCUGG-GGUAu -5'
5617 3' -60.5 NC_001806.1 + 113882 0.79 0.126475
Target:  5'- cGGGuUAGCGCGGGgggCCACGACCCCGUGu -3'
miRNA:   3'- -CUC-GUUGCGCCCg--GGUGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 71952 0.78 0.147249
Target:  5'- -cGCGAcCGCGGGCCCugGGCCgCCGc- -3'
miRNA:   3'- cuCGUU-GCGCCCGGGugCUGG-GGUau -5'
5617 3' -60.5 NC_001806.1 + 95326 0.78 0.158764
Target:  5'- aGGGCGGCGCGGGCCCcgacgACGACggggaCCGUGu -3'
miRNA:   3'- -CUCGUUGCGCCCGGG-----UGCUGg----GGUAU- -5'
5617 3' -60.5 NC_001806.1 + 23477 0.76 0.198314
Target:  5'- -cGCGGCGCaGGCCCGCccgcGCCCCGUGg -3'
miRNA:   3'- cuCGUUGCGcCCGGGUGc---UGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 23095 0.75 0.234778
Target:  5'- uGAGCcugguCGCcgGGGCCCugGGCCCCGc- -3'
miRNA:   3'- -CUCGuu---GCG--CCCGGGugCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 113032 0.74 0.276709
Target:  5'- cGGCGGuCGgGGGCCUuaaccGCGACCCCGUc -3'
miRNA:   3'- cUCGUU-GCgCCCGGG-----UGCUGGGGUAu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.