miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 22557 0.66 0.679342
Target:  5'- -cGCGGCGCugacgGGGgCCGCGgggaGCCCCGg- -3'
miRNA:   3'- cuCGUUGCG-----CCCgGGUGC----UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 23721 0.66 0.679342
Target:  5'- -cGguGCGcCGGGCCCGC--CCCCGc- -3'
miRNA:   3'- cuCguUGC-GCCCGGGUGcuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 147509 0.66 0.678346
Target:  5'- gGGGCGGCGCcgcgggaGGGCCC--GugCCCAc- -3'
miRNA:   3'- -CUCGUUGCG-------CCCGGGugCugGGGUau -5'
5617 3' -60.5 NC_001806.1 + 77522 0.66 0.669367
Target:  5'- cGAGUGA-GCGgaGGCCCGgGGCCCCu-- -3'
miRNA:   3'- -CUCGUUgCGC--CCGGGUgCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 147714 0.66 0.669367
Target:  5'- aGGCGGCGCucgcacgcacGGGgCCACGGCCgCGc- -3'
miRNA:   3'- cUCGUUGCG----------CCCgGGUGCUGGgGUau -5'
5617 3' -60.5 NC_001806.1 + 47341 0.66 0.669367
Target:  5'- uGGGCuuuAGCGCGGGCCC-CG-CgCUAUGu -3'
miRNA:   3'- -CUCG---UUGCGCCCGGGuGCuGgGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 2517 0.66 0.669367
Target:  5'- uGGGCGGCggggGCGGGCCCgGCGcACCgCGc- -3'
miRNA:   3'- -CUCGUUG----CGCCCGGG-UGC-UGGgGUau -5'
5617 3' -60.5 NC_001806.1 + 36839 0.66 0.669367
Target:  5'- aGGCcguACGcCGGGCCCAC--CCCCGc- -3'
miRNA:   3'- cUCGu--UGC-GCCCGGGUGcuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 22380 0.66 0.659363
Target:  5'- cAGCGugGCGCGGGCCgu--GCCCCAc- -3'
miRNA:   3'- cUCGU--UGCGCCCGGgugcUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 77155 0.66 0.659363
Target:  5'- cGGGgGGCGCGuGGCCCAacacgcCGACCUgAg- -3'
miRNA:   3'- -CUCgUUGCGC-CCGGGU------GCUGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 3669 0.66 0.659363
Target:  5'- -cGcCGGCGcCGGGgcucCCCGCGGCCCCc-- -3'
miRNA:   3'- cuC-GUUGC-GCCC----GGGUGCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 120842 0.66 0.659363
Target:  5'- cGGCAugGCgcagcuGGGaCCCcgGCGGCCCCu-- -3'
miRNA:   3'- cUCGUugCG------CCC-GGG--UGCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 102577 0.66 0.659363
Target:  5'- -cGgAGCGCGGucgcuaucGUCgGCGGCCCCGUGc -3'
miRNA:   3'- cuCgUUGCGCC--------CGGgUGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 7547 0.66 0.659363
Target:  5'- gGAGCAuACGCucGGGCCCGCGucgggaUCCAc- -3'
miRNA:   3'- -CUCGU-UGCG--CCCGGGUGCug----GGGUau -5'
5617 3' -60.5 NC_001806.1 + 31090 0.66 0.659363
Target:  5'- uGGCGACccggcuGCGGG-CCGCGGuCCCCGg- -3'
miRNA:   3'- cUCGUUG------CGCCCgGGUGCU-GGGGUau -5'
5617 3' -60.5 NC_001806.1 + 100250 0.66 0.659363
Target:  5'- -cGCAcCGUGaGGCCCAUaggccacgGACCCCGc- -3'
miRNA:   3'- cuCGUuGCGC-CCGGGUG--------CUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 33667 0.67 0.649338
Target:  5'- cGGGCcgucUGCuGGCCCGCGGCCaCAUAa -3'
miRNA:   3'- -CUCGuu--GCGcCCGGGUGCUGGgGUAU- -5'
5617 3' -60.5 NC_001806.1 + 5505 0.67 0.649338
Target:  5'- gGAGCAGCG-GaGGCCgC-CGGCCCCc-- -3'
miRNA:   3'- -CUCGUUGCgC-CCGG-GuGCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 21941 0.67 0.649338
Target:  5'- -cGCGACGCcacGGGCCCuucACGgccgggcaGCCCCGg- -3'
miRNA:   3'- cuCGUUGCG---CCCGGG---UGC--------UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 6674 0.67 0.646328
Target:  5'- gGAGCAuguCGUGGGCCCugGAaauggcggacaccuUCCUg-- -3'
miRNA:   3'- -CUCGUu--GCGCCCGGGugCU--------------GGGGuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.