miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 95326 0.78 0.158764
Target:  5'- aGGGCGGCGCGGGCCCcgacgACGACggggaCCGUGu -3'
miRNA:   3'- -CUCGUUGCGCCCGGG-----UGCUGg----GGUAU- -5'
5617 3' -60.5 NC_001806.1 + 71952 0.78 0.147249
Target:  5'- -cGCGAcCGCGGGCCCugGGCCgCCGc- -3'
miRNA:   3'- cuCGUU-GCGCCCGGGugCUGG-GGUau -5'
5617 3' -60.5 NC_001806.1 + 113882 0.79 0.126475
Target:  5'- cGGGuUAGCGCGGGgggCCACGACCCCGUGu -3'
miRNA:   3'- -CUC-GUUGCGCCCg--GGUGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 113847 0.8 0.111272
Target:  5'- -uGCGGCGCGcGGCCCugGACCgCCAUc -3'
miRNA:   3'- cuCGUUGCGC-CCGGGugCUGG-GGUAu -5'
5617 3' -60.5 NC_001806.1 + 3133 0.85 0.050674
Target:  5'- cGGCAGCGCgGGGCCCAgGGCCCCGg- -3'
miRNA:   3'- cUCGUUGCG-CCCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 21502 0.72 0.346649
Target:  5'- cGGCGAC-CGGGCCC-CGGCCCgGg- -3'
miRNA:   3'- cUCGUUGcGCCCGGGuGCUGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 150976 0.72 0.346649
Target:  5'- -cGCu-CGCGGGCCCACGAgCCgCGg- -3'
miRNA:   3'- cuCGuuGCGCCCGGGUGCUgGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 5766 0.7 0.42837
Target:  5'- cGGGCAggggGCG-GGGCCCG-GGCCCCGa- -3'
miRNA:   3'- -CUCGU----UGCgCCCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 2665 0.7 0.42837
Target:  5'- cGGCGGcCGCGGGCgCCGCcguguggcugGGCCCCGg- -3'
miRNA:   3'- cUCGUU-GCGCCCG-GGUG----------CUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 106745 0.71 0.411126
Target:  5'- aGGGUcccuGACGCGGGCCgacaACGGCUCCGc- -3'
miRNA:   3'- -CUCG----UUGCGCCCGGg---UGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 106875 0.71 0.411126
Target:  5'- cGGGCGcCGagcaGGGCCCGCGcCCCCc-- -3'
miRNA:   3'- -CUCGUuGCg---CCCGGGUGCuGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 12163 0.71 0.402667
Target:  5'- gGGGCGACGUGGGCaCGCGGUCaCCGUGa -3'
miRNA:   3'- -CUCGUUGCGCCCGgGUGCUGG-GGUAU- -5'
5617 3' -60.5 NC_001806.1 + 5675 0.71 0.402667
Target:  5'- aGGGCGG-GUGGGUCCGCG-CCCCGc- -3'
miRNA:   3'- -CUCGUUgCGCCCGGGUGCuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 41800 0.71 0.39432
Target:  5'- ---gGugGCGGaGUCCACGGCCCCGc- -3'
miRNA:   3'- cucgUugCGCC-CGGGUGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 4335 0.71 0.385268
Target:  5'- -cGCcGCGCGGGCCCggcggcgcucgauGCGGCCCgCGg- -3'
miRNA:   3'- cuCGuUGCGCCCGGG-------------UGCUGGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 100390 0.71 0.377964
Target:  5'- cGGGCGGCGCggGGGCCgGgGugCCCGa- -3'
miRNA:   3'- -CUCGUUGCG--CCCGGgUgCugGGGUau -5'
5617 3' -60.5 NC_001806.1 + 45288 0.71 0.377964
Target:  5'- cGGGaGACGCGGGCCCGCGcggggagccGCCCgGc- -3'
miRNA:   3'- -CUCgUUGCGCCCGGGUGC---------UGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 89527 0.71 0.377964
Target:  5'- cGAGCugcuGCGCGGcGCCCcggccgGCGGCCCgGUu -3'
miRNA:   3'- -CUCGu---UGCGCC-CGGG------UGCUGGGgUAu -5'
5617 3' -60.5 NC_001806.1 + 56854 0.72 0.36996
Target:  5'- aGGGCGGCcgcgGCGGGCCCAcCGAUCCa--- -3'
miRNA:   3'- -CUCGUUG----CGCCCGGGU-GCUGGGguau -5'
5617 3' -60.5 NC_001806.1 + 38022 0.72 0.362071
Target:  5'- cGGCAGCccCGGGaccaCCGCGACCCCGa- -3'
miRNA:   3'- cUCGUUGc-GCCCg---GGUGCUGGGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.