Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5617 | 5' | -56.8 | NC_001806.1 | + | 24805 | 0.66 | 0.860791 |
Target: 5'- --gGCCCUGccgcCGGcGCCgCCCGGGa- -3' miRNA: 3'- aaaUGGGACaaa-GCC-CGG-GGGCUCaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 150253 | 0.66 | 0.852944 |
Target: 5'- cUUGgCCUGcgUCGGuGCCCCgGGGc- -3' miRNA: 3'- aAAUgGGACaaAGCC-CGGGGgCUCaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 125832 | 0.66 | 0.844891 |
Target: 5'- --gGCgCCUGacgcgccgCGGGCCCCCGGc-- -3' miRNA: 3'- aaaUG-GGACaaa-----GCCCGGGGGCUcaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 2681 | 0.67 | 0.810771 |
Target: 5'- --cGCCgUGUggcUGGGCCCCgGGGg- -3' miRNA: 3'- aaaUGGgACAaa-GCCCGGGGgCUCaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 78314 | 0.67 | 0.783405 |
Target: 5'- --cGCCCUGg--CGcucGGUCCCCGAGc- -3' miRNA: 3'- aaaUGGGACaaaGC---CCGGGGGCUCaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 84458 | 0.67 | 0.783405 |
Target: 5'- --gAgCCUGcUUCGGGCCgcggggCCCGAGg- -3' miRNA: 3'- aaaUgGGACaAAGCCCGG------GGGCUCaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 106697 | 0.67 | 0.764447 |
Target: 5'- --gGCUCUucc-CGGGCCCCCGGGc- -3' miRNA: 3'- aaaUGGGAcaaaGCCCGGGGGCUCaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 105728 | 0.69 | 0.704984 |
Target: 5'- --aGCCCUGccauagccaCGGGCCCCgUGGGUUa -3' miRNA: 3'- aaaUGGGACaaa------GCCCGGGG-GCUCAA- -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 129658 | 0.69 | 0.694796 |
Target: 5'- -cUGCCCUGcgcccgccCGGGCCgCCGAGc- -3' miRNA: 3'- aaAUGGGACaaa-----GCCCGGgGGCUCaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 140946 | 0.7 | 0.632859 |
Target: 5'- --gGCCUcccGUUcCGGGCCCCCGuGUa -3' miRNA: 3'- aaaUGGGa--CAAaGCCCGGGGGCuCAa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 101861 | 0.7 | 0.622484 |
Target: 5'- ----gCCUGg--CGGGCCCCCGAu-- -3' miRNA: 3'- aaaugGGACaaaGCCCGGGGGCUcaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 72524 | 0.75 | 0.357392 |
Target: 5'- --aGCCCUGcgucggcgUGGGCCCCCGGGa- -3' miRNA: 3'- aaaUGGGACaaa-----GCCCGGGGGCUCaa -5' |
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5617 | 5' | -56.8 | NC_001806.1 | + | 105218 | 1.04 | 0.004446 |
Target: 5'- aUUUACCCUGUUUCGGGCCCCCGAGUUg -3' miRNA: 3'- -AAAUGGGACAAAGCCCGGGGGCUCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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