miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 5' -56.8 NC_001806.1 + 24805 0.66 0.860791
Target:  5'- --gGCCCUGccgcCGGcGCCgCCCGGGa- -3'
miRNA:   3'- aaaUGGGACaaa-GCC-CGG-GGGCUCaa -5'
5617 5' -56.8 NC_001806.1 + 150253 0.66 0.852944
Target:  5'- cUUGgCCUGcgUCGGuGCCCCgGGGc- -3'
miRNA:   3'- aAAUgGGACaaAGCC-CGGGGgCUCaa -5'
5617 5' -56.8 NC_001806.1 + 125832 0.66 0.844891
Target:  5'- --gGCgCCUGacgcgccgCGGGCCCCCGGc-- -3'
miRNA:   3'- aaaUG-GGACaaa-----GCCCGGGGGCUcaa -5'
5617 5' -56.8 NC_001806.1 + 2681 0.67 0.810771
Target:  5'- --cGCCgUGUggcUGGGCCCCgGGGg- -3'
miRNA:   3'- aaaUGGgACAaa-GCCCGGGGgCUCaa -5'
5617 5' -56.8 NC_001806.1 + 84458 0.67 0.783405
Target:  5'- --gAgCCUGcUUCGGGCCgcggggCCCGAGg- -3'
miRNA:   3'- aaaUgGGACaAAGCCCGG------GGGCUCaa -5'
5617 5' -56.8 NC_001806.1 + 78314 0.67 0.783405
Target:  5'- --cGCCCUGg--CGcucGGUCCCCGAGc- -3'
miRNA:   3'- aaaUGGGACaaaGC---CCGGGGGCUCaa -5'
5617 5' -56.8 NC_001806.1 + 106697 0.67 0.764447
Target:  5'- --gGCUCUucc-CGGGCCCCCGGGc- -3'
miRNA:   3'- aaaUGGGAcaaaGCCCGGGGGCUCaa -5'
5617 5' -56.8 NC_001806.1 + 105728 0.69 0.704984
Target:  5'- --aGCCCUGccauagccaCGGGCCCCgUGGGUUa -3'
miRNA:   3'- aaaUGGGACaaa------GCCCGGGG-GCUCAA- -5'
5617 5' -56.8 NC_001806.1 + 129658 0.69 0.694796
Target:  5'- -cUGCCCUGcgcccgccCGGGCCgCCGAGc- -3'
miRNA:   3'- aaAUGGGACaaa-----GCCCGGgGGCUCaa -5'
5617 5' -56.8 NC_001806.1 + 140946 0.7 0.632859
Target:  5'- --gGCCUcccGUUcCGGGCCCCCGuGUa -3'
miRNA:   3'- aaaUGGGa--CAAaGCCCGGGGGCuCAa -5'
5617 5' -56.8 NC_001806.1 + 101861 0.7 0.622484
Target:  5'- ----gCCUGg--CGGGCCCCCGAu-- -3'
miRNA:   3'- aaaugGGACaaaGCCCGGGGGCUcaa -5'
5617 5' -56.8 NC_001806.1 + 72524 0.75 0.357392
Target:  5'- --aGCCCUGcgucggcgUGGGCCCCCGGGa- -3'
miRNA:   3'- aaaUGGGACaaa-----GCCCGGGGGCUCaa -5'
5617 5' -56.8 NC_001806.1 + 105218 1.04 0.004446
Target:  5'- aUUUACCCUGUUUCGGGCCCCCGAGUUg -3'
miRNA:   3'- -AAAUGGGACAAAGCCCGGGGGCUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.