miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5618 3' -55.3 NC_001806.1 + 106408 0.66 0.928528
Target:  5'- cGCACCuGCACAACG-CGUCcaCGACCu -3'
miRNA:   3'- aUGUGG-UGUGUUGUgGCGGa-GCUGGu -5'
5618 3' -55.3 NC_001806.1 + 85717 0.66 0.928528
Target:  5'- aGCGCCgGCACc-CACCGCCcCGAaCCc -3'
miRNA:   3'- aUGUGG-UGUGuuGUGGCGGaGCU-GGu -5'
5618 3' -55.3 NC_001806.1 + 97802 0.66 0.928528
Target:  5'- aAC-CCACGCcccCGCCGCCcggGGCCAg -3'
miRNA:   3'- aUGuGGUGUGuu-GUGGCGGag-CUGGU- -5'
5618 3' -55.3 NC_001806.1 + 81418 0.66 0.923095
Target:  5'- cAgACCAagguccguCAGCGCCGCCgccUGACCGc -3'
miRNA:   3'- aUgUGGUgu------GUUGUGGCGGa--GCUGGU- -5'
5618 3' -55.3 NC_001806.1 + 29783 0.66 0.923095
Target:  5'- cGCGCCcccccACGCAgagGCGCCGCCgCGcCCc -3'
miRNA:   3'- aUGUGG-----UGUGU---UGUGGCGGaGCuGGu -5'
5618 3' -55.3 NC_001806.1 + 93998 0.66 0.923095
Target:  5'- gGCGCCGCGagAugGCCGCCcCGGuguCCGa -3'
miRNA:   3'- aUGUGGUGUg-UugUGGCGGaGCU---GGU- -5'
5618 3' -55.3 NC_001806.1 + 30457 0.66 0.923095
Target:  5'- gGCGCCGCccccucCGGCGCCGCCcCGcuccccuccGCCGc -3'
miRNA:   3'- aUGUGGUGu-----GUUGUGGCGGaGC---------UGGU- -5'
5618 3' -55.3 NC_001806.1 + 98539 0.66 0.923095
Target:  5'- cACGCCgACGcCAACGCCGCCauguuugCgGGCCu -3'
miRNA:   3'- aUGUGG-UGU-GUUGUGGCGGa------G-CUGGu -5'
5618 3' -55.3 NC_001806.1 + 22588 0.66 0.922538
Target:  5'- gGCGCCgGCGCAGaugacgaggggguCGCCGCCgUCGccGCCGc -3'
miRNA:   3'- aUGUGG-UGUGUU-------------GUGGCGG-AGC--UGGU- -5'
5618 3' -55.3 NC_001806.1 + 95509 0.66 0.921417
Target:  5'- gGCugUACGCGG-ACCGCCUgacgaagcggucguUGGCCAg -3'
miRNA:   3'- aUGugGUGUGUUgUGGCGGA--------------GCUGGU- -5'
5618 3' -55.3 NC_001806.1 + 131188 0.66 0.917416
Target:  5'- cACAUCGacCACAGCGCCuGCCg-GACCc -3'
miRNA:   3'- aUGUGGU--GUGUUGUGG-CGGagCUGGu -5'
5618 3' -55.3 NC_001806.1 + 54362 0.66 0.917416
Target:  5'- -uUACCGCcgAUGACGCUGCCgCGACUg -3'
miRNA:   3'- auGUGGUG--UGUUGUGGCGGaGCUGGu -5'
5618 3' -55.3 NC_001806.1 + 19548 0.66 0.917416
Target:  5'- gACGCCGCGCuuuuACACaaggcgcaaaagCGCCuggggaaaugUCGGCCAu -3'
miRNA:   3'- aUGUGGUGUGu---UGUG------------GCGG----------AGCUGGU- -5'
5618 3' -55.3 NC_001806.1 + 1735 0.66 0.911493
Target:  5'- aGCGCCG-GCAGCACgGCC-CGGCg- -3'
miRNA:   3'- aUGUGGUgUGUUGUGgCGGaGCUGgu -5'
5618 3' -55.3 NC_001806.1 + 37160 0.66 0.911493
Target:  5'- gACGCCACGCucGACGCgguuggcgaGCCU-GGCCAg -3'
miRNA:   3'- aUGUGGUGUG--UUGUGg--------CGGAgCUGGU- -5'
5618 3' -55.3 NC_001806.1 + 147566 0.66 0.911493
Target:  5'- cGCGCCAC-CGucGCACgCGCC-CGGCaCAg -3'
miRNA:   3'- aUGUGGUGuGU--UGUG-GCGGaGCUG-GU- -5'
5618 3' -55.3 NC_001806.1 + 132212 0.66 0.910888
Target:  5'- gACACCccccaguGCGCGucCGCCGCUUCgcuGACCGu -3'
miRNA:   3'- aUGUGG-------UGUGUu-GUGGCGGAG---CUGGU- -5'
5618 3' -55.3 NC_001806.1 + 129663 0.66 0.905328
Target:  5'- cUGCGCC-CGCccGgGCCGCCgagCGGCCc -3'
miRNA:   3'- -AUGUGGuGUGu-UgUGGCGGa--GCUGGu -5'
5618 3' -55.3 NC_001806.1 + 100044 0.66 0.905328
Target:  5'- gACuCCG-ACGGCcCCGCCUCGuACCGg -3'
miRNA:   3'- aUGuGGUgUGUUGuGGCGGAGC-UGGU- -5'
5618 3' -55.3 NC_001806.1 + 125832 0.66 0.905328
Target:  5'- gGCGCCugAC-GCGCCGCgggccccCGGCCGc -3'
miRNA:   3'- aUGUGGugUGuUGUGGCGga-----GCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.