miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5619 3' -52.6 NC_001806.1 + 60007 0.66 0.977366
Target:  5'- --gGGGGAcgGCCGgguCCggaGCCGCGCuGCc -3'
miRNA:   3'- cuaCCCCUuuUGGU---GG---UGGUGCGuUG- -5'
5619 3' -52.6 NC_001806.1 + 21235 0.66 0.977366
Target:  5'- --cGGGGAcGACC-CCgACCACGacccCGACc -3'
miRNA:   3'- cuaCCCCUuUUGGuGG-UGGUGC----GUUG- -5'
5619 3' -52.6 NC_001806.1 + 59051 0.66 0.977366
Target:  5'- --cGGGGGAGGCgggggccaCACCGCCAgGgGAa -3'
miRNA:   3'- cuaCCCCUUUUG--------GUGGUGGUgCgUUg -5'
5619 3' -52.6 NC_001806.1 + 44260 0.66 0.977366
Target:  5'- --gGGGGAuccaaggaaGAGCguCCGCCccCGCAACc -3'
miRNA:   3'- cuaCCCCU---------UUUGguGGUGGu-GCGUUG- -5'
5619 3' -52.6 NC_001806.1 + 30291 0.66 0.974804
Target:  5'- --cGGGGcGGAGCCgGCCGCC-CGCcccGCg -3'
miRNA:   3'- cuaCCCC-UUUUGG-UGGUGGuGCGu--UG- -5'
5619 3' -52.6 NC_001806.1 + 32740 0.66 0.974804
Target:  5'- -uUGGGGAGAAgCAggugucuaacCUACCuggaaACGCGGCg -3'
miRNA:   3'- cuACCCCUUUUgGU----------GGUGG-----UGCGUUG- -5'
5619 3' -52.6 NC_001806.1 + 67256 0.66 0.974804
Target:  5'- --cGGGGu--GCCGCagCGCCAgaaGCAGCg -3'
miRNA:   3'- cuaCCCCuuuUGGUG--GUGGUg--CGUUG- -5'
5619 3' -52.6 NC_001806.1 + 62643 0.66 0.974804
Target:  5'- ---cGGGAGcGCCugCGCCACG-GACc -3'
miRNA:   3'- cuacCCCUUuUGGugGUGGUGCgUUG- -5'
5619 3' -52.6 NC_001806.1 + 3541 0.66 0.973168
Target:  5'- cGcgGGGGAGgcgggcgcggcggacAGCCGCC-CCAgGgCGGCg -3'
miRNA:   3'- -CuaCCCCUU---------------UUGGUGGuGGUgC-GUUG- -5'
5619 3' -52.6 NC_001806.1 + 123609 0.66 0.972036
Target:  5'- uGUGGGG-AGACgGCgACCugGCc-- -3'
miRNA:   3'- cUACCCCuUUUGgUGgUGGugCGuug -5'
5619 3' -52.6 NC_001806.1 + 32207 0.66 0.972036
Target:  5'- cGUGGGGuuggugugcaAAGGCaCGCgCACCcGCGCGGCc -3'
miRNA:   3'- cUACCCC----------UUUUG-GUG-GUGG-UGCGUUG- -5'
5619 3' -52.6 NC_001806.1 + 123870 0.66 0.972036
Target:  5'- cGAUGGcGAauGAGCCGCUcgucucaucGCCGCGCGu- -3'
miRNA:   3'- -CUACCcCU--UUUGGUGG---------UGGUGCGUug -5'
5619 3' -52.6 NC_001806.1 + 26377 0.66 0.972036
Target:  5'- cAUGGcccgccGCCGCCGCCAuCGCGGCc -3'
miRNA:   3'- cUACCccuuu-UGGUGGUGGU-GCGUUG- -5'
5619 3' -52.6 NC_001806.1 + 79284 0.66 0.972036
Target:  5'- -uUGGGGcccgGAAGCCugGCCcCCACGCu-- -3'
miRNA:   3'- cuACCCC----UUUUGG--UGGuGGUGCGuug -5'
5619 3' -52.6 NC_001806.1 + 77538 0.66 0.970274
Target:  5'- --cGGGGccccuggugcugcgcGAGGCCACCAgUACGCu-- -3'
miRNA:   3'- cuaCCCC---------------UUUUGGUGGUgGUGCGuug -5'
5619 3' -52.6 NC_001806.1 + 51133 0.66 0.969055
Target:  5'- --cGGGGAGgcgcgcGACCGggcugggaggcCCGCCACGCc-- -3'
miRNA:   3'- cuaCCCCUU------UUGGU-----------GGUGGUGCGuug -5'
5619 3' -52.6 NC_001806.1 + 115071 0.66 0.965856
Target:  5'- cGUGGcGGGAAACCGCCugggGCCgGCcCAGCc -3'
miRNA:   3'- cUACC-CCUUUUGGUGG----UGG-UGcGUUG- -5'
5619 3' -52.6 NC_001806.1 + 148813 0.66 0.965856
Target:  5'- cGggGGGGGcucccccccgAGACCGCCcccccauCCACGCccuGCg -3'
miRNA:   3'- -CuaCCCCU----------UUUGGUGGu------GGUGCGu--UG- -5'
5619 3' -52.6 NC_001806.1 + 66481 0.66 0.965856
Target:  5'- -cUGGGGGuucguGACCugGCCAgCCGaGCAACg -3'
miRNA:   3'- cuACCCCUu----UUGG--UGGU-GGUgCGUUG- -5'
5619 3' -52.6 NC_001806.1 + 12146 0.66 0.965856
Target:  5'- --aGGGcGAAuGCCACgGCgGgGCGACg -3'
miRNA:   3'- cuaCCC-CUUuUGGUGgUGgUgCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.