miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5620 3' -51.7 NC_001806.1 + 98024 0.66 0.9889
Target:  5'- -cGGCcACCGugGgccggCGGGUGagcGCGCg -3'
miRNA:   3'- uaUUGuUGGCugCa----GUCCGCaa-CGCG- -5'
5620 3' -51.7 NC_001806.1 + 7667 0.66 0.9889
Target:  5'- -gGGCucuACCcucugGACGccCGGGCGcUUGCGCa -3'
miRNA:   3'- uaUUGu--UGG-----CUGCa-GUCCGC-AACGCG- -5'
5620 3' -51.7 NC_001806.1 + 95048 0.66 0.9889
Target:  5'- gGUGGCcguggAACUGGCGcuguUCGGGCGgcGgGCg -3'
miRNA:   3'- -UAUUG-----UUGGCUGC----AGUCCGCaaCgCG- -5'
5620 3' -51.7 NC_001806.1 + 44395 0.66 0.987391
Target:  5'- -gAACGACCagGAgGccgCGGGCGUUGaGCg -3'
miRNA:   3'- uaUUGUUGG--CUgCa--GUCCGCAACgCG- -5'
5620 3' -51.7 NC_001806.1 + 64948 0.66 0.987391
Target:  5'- -gGACcACCGGCGUC-GGCGcccGgGCc -3'
miRNA:   3'- uaUUGuUGGCUGCAGuCCGCaa-CgCG- -5'
5620 3' -51.7 NC_001806.1 + 25861 0.66 0.987391
Target:  5'- uGUGGCAGCCcgGGCcccccgCGGGCGcgcGCGCg -3'
miRNA:   3'- -UAUUGUUGG--CUGca----GUCCGCaa-CGCG- -5'
5620 3' -51.7 NC_001806.1 + 130215 0.66 0.987391
Target:  5'- -cGGCAugCGAcaCGUCgcugGGGCGggggucGCGCa -3'
miRNA:   3'- uaUUGUugGCU--GCAG----UCCGCaa----CGCG- -5'
5620 3' -51.7 NC_001806.1 + 40041 0.66 0.987391
Target:  5'- cAUGGCGuGCCGGCGUCAauGGUaaacagcgUGUGCa -3'
miRNA:   3'- -UAUUGU-UGGCUGCAGU--CCGca------ACGCG- -5'
5620 3' -51.7 NC_001806.1 + 25936 0.66 0.985729
Target:  5'- --cGCGGCgGGCGUgGgGGCGggGcCGCg -3'
miRNA:   3'- uauUGUUGgCUGCAgU-CCGCaaC-GCG- -5'
5620 3' -51.7 NC_001806.1 + 134951 0.66 0.985729
Target:  5'- gGUGGCGGCCGAccccucauCGUCGGcCGUcGCGg -3'
miRNA:   3'- -UAUUGUUGGCU--------GCAGUCcGCAaCGCg -5'
5620 3' -51.7 NC_001806.1 + 62300 0.66 0.985729
Target:  5'- -cGACGACaguGGCGgCGGGCcugGCGCg -3'
miRNA:   3'- uaUUGUUGg--CUGCaGUCCGcaaCGCG- -5'
5620 3' -51.7 NC_001806.1 + 147666 0.66 0.985729
Target:  5'- -gGGCGGCCGGC-UCcgccccggGGGCcGggGCGCg -3'
miRNA:   3'- uaUUGUUGGCUGcAG--------UCCG-CaaCGCG- -5'
5620 3' -51.7 NC_001806.1 + 35908 0.66 0.983904
Target:  5'- -----uACCGGCGaCAGGgcUGUUGUGCg -3'
miRNA:   3'- uauuguUGGCUGCaGUCC--GCAACGCG- -5'
5620 3' -51.7 NC_001806.1 + 3511 0.66 0.983904
Target:  5'- nUGGCGGgCGGCGUCGGG-GUcGuCGCc -3'
miRNA:   3'- uAUUGUUgGCUGCAGUCCgCAaC-GCG- -5'
5620 3' -51.7 NC_001806.1 + 25815 0.66 0.981908
Target:  5'- cGUGACGugUGACGU---GCGgagUGCGCc -3'
miRNA:   3'- -UAUUGUugGCUGCAgucCGCa--ACGCG- -5'
5620 3' -51.7 NC_001806.1 + 128495 0.66 0.981908
Target:  5'- -aGACGuuuCCGGCGaUCAGcGUGgcGUGCg -3'
miRNA:   3'- uaUUGUu--GGCUGC-AGUC-CGCaaCGCG- -5'
5620 3' -51.7 NC_001806.1 + 83076 0.66 0.981908
Target:  5'- -cAGCAGCUggaaGGCGg-GGGCGUUcgaGCGCg -3'
miRNA:   3'- uaUUGUUGG----CUGCagUCCGCAA---CGCG- -5'
5620 3' -51.7 NC_001806.1 + 62843 0.67 0.980624
Target:  5'- -aGGCGGCgGugGgCAucagcgcgacaaacuGGUGUUGCGCa -3'
miRNA:   3'- uaUUGUUGgCugCaGU---------------CCGCAACGCG- -5'
5620 3' -51.7 NC_001806.1 + 94997 0.67 0.979732
Target:  5'- -cAGCAACCuGACcgcgCuGGCGcgGCGCg -3'
miRNA:   3'- uaUUGUUGG-CUGca--GuCCGCaaCGCG- -5'
5620 3' -51.7 NC_001806.1 + 116209 0.67 0.979732
Target:  5'- -cGGCAACUGACG-CuGGCcgacGUgGCGCa -3'
miRNA:   3'- uaUUGUUGGCUGCaGuCCG----CAaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.