Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5621 | 3' | -48.7 | NC_001806.1 | + | 64438 | 0.66 | 0.999214 |
Target: 5'- cUCCCGGGUCCGgaUcCGCAg------- -3' miRNA: 3'- -AGGGUCCAGGUgaA-GCGUauaauucc -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 109687 | 0.66 | 0.999034 |
Target: 5'- aCCCGGG-CUGgUUCGCAgc--GAGGu -3' miRNA: 3'- aGGGUCCaGGUgAAGCGUauaaUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 64036 | 0.66 | 0.999034 |
Target: 5'- cCCCAGGUUCA----GCAUGgcGGGGg -3' miRNA: 3'- aGGGUCCAGGUgaagCGUAUaaUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 151260 | 0.66 | 0.998821 |
Target: 5'- cCCCGGGcCCACgccggGCGg--UGGGGg -3' miRNA: 3'- aGGGUCCaGGUGaag--CGUauaAUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 28313 | 0.66 | 0.998821 |
Target: 5'- -gCCGGGcgCCAUguuggggCGCcAUGUUAGGGg -3' miRNA: 3'- agGGUCCa-GGUGaa-----GCG-UAUAAUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 135420 | 0.67 | 0.998272 |
Target: 5'- cUCCAGGUCCugg--GCGUAcgAAGGg -3' miRNA: 3'- aGGGUCCAGGugaagCGUAUaaUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 67401 | 0.67 | 0.996519 |
Target: 5'- gUCCAGGgCCugUUCgGUAUcgucGUUGGGGg -3' miRNA: 3'- aGGGUCCaGGugAAG-CGUA----UAAUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 86010 | 0.69 | 0.990098 |
Target: 5'- cUCCCGGGggCGCUUgGCcgGggAGGGc -3' miRNA: 3'- -AGGGUCCagGUGAAgCGuaUaaUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 33156 | 0.69 | 0.988693 |
Target: 5'- gUCCCGGG-CCGuacgcggcCUUCGCcccgUGAGGg -3' miRNA: 3'- -AGGGUCCaGGU--------GAAGCGuauaAUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 63322 | 0.7 | 0.983539 |
Target: 5'- uUCCCAGGUugcagaccCCACUggaUCGCuug--GAGGc -3' miRNA: 3'- -AGGGUCCA--------GGUGA---AGCGuauaaUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 115123 | 0.7 | 0.981476 |
Target: 5'- gCCCAGGUgCCGCggCGCGc---AGGGa -3' miRNA: 3'- aGGGUCCA-GGUGaaGCGUauaaUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 130162 | 0.71 | 0.974125 |
Target: 5'- cUCCCAGGUCacaaaccuGCUgugUCGCcgGUUcAAGGg -3' miRNA: 3'- -AGGGUCCAGg-------UGA---AGCGuaUAA-UUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 19217 | 0.71 | 0.961303 |
Target: 5'- aCCCGGGcCCGCUU-GgGUcgUGGGGg -3' miRNA: 3'- aGGGUCCaGGUGAAgCgUAuaAUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 44455 | 0.74 | 0.892006 |
Target: 5'- gCCCGGcGUCCGCguggaGCAUGcgGAGGg -3' miRNA: 3'- aGGGUC-CAGGUGaag--CGUAUaaUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 66778 | 0.76 | 0.819455 |
Target: 5'- gUCCAGGUCCACgaaCGCAcAUgccggGAGGa -3' miRNA: 3'- aGGGUCCAGGUGaa-GCGUaUAa----UUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 62198 | 0.76 | 0.810348 |
Target: 5'- aUCgCCAGGUCCGCcgUCGCGcucUGguccgUAAGGg -3' miRNA: 3'- -AG-GGUCCAGGUGa-AGCGU---AUa----AUUCC- -5' |
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5621 | 3' | -48.7 | NC_001806.1 | + | 104202 | 1.12 | 0.010037 |
Target: 5'- gUCCCAGGUCCACUUCGCAUAUUAAGGu -3' miRNA: 3'- -AGGGUCCAGGUGAAGCGUAUAAUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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