miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5621 5' -56.3 NC_001806.1 + 33529 0.67 0.865357
Target:  5'- cGGCCUaaUGGAUuuCCGGGCGcggugcCCCUGUc -3'
miRNA:   3'- -CCGGA--GCUUAu-GGCUCGCu-----GGGACGu -5'
5621 5' -56.3 NC_001806.1 + 38532 0.67 0.864609
Target:  5'- uGGCCUCuGGugguggcgcaccgGUAgCGAGCGACCggGCc -3'
miRNA:   3'- -CCGGAG-CU-------------UAUgGCUCGCUGGgaCGu -5'
5621 5' -56.3 NC_001806.1 + 123264 0.67 0.859315
Target:  5'- uGGCCgagacgcaccucCGA--GCCGAGauuuacaaggaccaGACCCUGCAg -3'
miRNA:   3'- -CCGGa-----------GCUuaUGGCUCg-------------CUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 115412 0.67 0.857784
Target:  5'- gGGCCUCGccGGUGCUcAGC--CCCUGCu -3'
miRNA:   3'- -CCGGAGC--UUAUGGcUCGcuGGGACGu -5'
5621 5' -56.3 NC_001806.1 + 111526 0.67 0.857784
Target:  5'- gGGCCgUCGGgcacGUACaCGGGUGGCCggGCGu -3'
miRNA:   3'- -CCGG-AGCU----UAUG-GCUCGCUGGgaCGU- -5'
5621 5' -56.3 NC_001806.1 + 23704 0.67 0.857784
Target:  5'- uGGCCUCGAucGCCGcGCGgugcgccggGCCC-GCc -3'
miRNA:   3'- -CCGGAGCUuaUGGCuCGC---------UGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 125856 0.67 0.857784
Target:  5'- cGGCCgccgCGGAcGCCGuGGCGcCCCgGCc -3'
miRNA:   3'- -CCGGa---GCUUaUGGC-UCGCuGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 90441 0.67 0.857784
Target:  5'- aGGCCcCGAAc-CUGAcGCGACUUUGCGa -3'
miRNA:   3'- -CCGGaGCUUauGGCU-CGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 124324 0.67 0.857016
Target:  5'- uGGaCCUCGGuaaguAUAUCGgccaacuGGCGuCCCUGCGc -3'
miRNA:   3'- -CC-GGAGCU-----UAUGGC-------UCGCuGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 69659 0.67 0.84204
Target:  5'- gGGUC-CGGccGUGCCGAcggaacaucugGCGAgCCUGCGg -3'
miRNA:   3'- -CCGGaGCU--UAUGGCU-----------CGCUgGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 46657 0.67 0.84204
Target:  5'- cGGCgUCGcgccccACCGAGCGACCUcgaGCc -3'
miRNA:   3'- -CCGgAGCuua---UGGCUCGCUGGGa--CGu -5'
5621 5' -56.3 NC_001806.1 + 93230 0.67 0.84204
Target:  5'- aGCCUCGGcgGCgGAGCGcacgaaagcucGCUgUGCGa -3'
miRNA:   3'- cCGGAGCUuaUGgCUCGC-----------UGGgACGU- -5'
5621 5' -56.3 NC_001806.1 + 101964 0.67 0.84204
Target:  5'- gGGUcagCUCGAccGCCGGGuCGGCCCgGUAc -3'
miRNA:   3'- -CCG---GAGCUuaUGGCUC-GCUGGGaCGU- -5'
5621 5' -56.3 NC_001806.1 + 9088 0.68 0.825541
Target:  5'- aGGCCggaagcccccCGGAgccACCGAGCGGCCagccagGCGa -3'
miRNA:   3'- -CCGGa---------GCUUa--UGGCUCGCUGGga----CGU- -5'
5621 5' -56.3 NC_001806.1 + 75260 0.68 0.825541
Target:  5'- cGGCCcUGGGcgcgGCCGccAGCGACCCgGCc -3'
miRNA:   3'- -CCGGaGCUUa---UGGC--UCGCUGGGaCGu -5'
5621 5' -56.3 NC_001806.1 + 24634 0.68 0.825541
Target:  5'- gGGCCUgGGcgcGCCGcuGCGGCCCgUGUAc -3'
miRNA:   3'- -CCGGAgCUua-UGGCu-CGCUGGG-ACGU- -5'
5621 5' -56.3 NC_001806.1 + 37477 0.68 0.799509
Target:  5'- uGGCCUUGGcgGUCGAuGCGGCCCgaggauugccgGCAa -3'
miRNA:   3'- -CCGGAGCUuaUGGCU-CGCUGGGa----------CGU- -5'
5621 5' -56.3 NC_001806.1 + 7028 0.68 0.790522
Target:  5'- cGGCCccagUUGG--GCCGGGCGACCCa--- -3'
miRNA:   3'- -CCGG----AGCUuaUGGCUCGCUGGGacgu -5'
5621 5' -56.3 NC_001806.1 + 69575 0.68 0.790522
Target:  5'- cGCCagCGAGcacacGCaCGGGCGGCUCUGCGa -3'
miRNA:   3'- cCGGa-GCUUa----UG-GCUCGCUGGGACGU- -5'
5621 5' -56.3 NC_001806.1 + 123225 0.68 0.790522
Target:  5'- uGGaCCga-GAUGCCGcccacGCGGCCCUGCGc -3'
miRNA:   3'- -CC-GGagcUUAUGGCu----CGCUGGGACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.