Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5622 | 3' | -59.7 | NC_001806.1 | + | 103180 | 1.11 | 0.000959 |
Target: 5'- uGUAGGACGACCACCUGCUCCGCCGCCg -3' miRNA: 3'- -CAUCCUGCUGGUGGACGAGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 30740 | 0.76 | 0.245387 |
Target: 5'- --cGGG-GGCCGCCUcUUCCGCCGCCg -3' miRNA: 3'- cauCCUgCUGGUGGAcGAGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 94638 | 0.76 | 0.251192 |
Target: 5'- -gGGGGCGACgAUC-GC-CCGCCGCCu -3' miRNA: 3'- caUCCUGCUGgUGGaCGaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 23233 | 0.76 | 0.263141 |
Target: 5'- --cGGACG-CCGCCgacgcgcugGCggCCGCCGCCg -3' miRNA: 3'- cauCCUGCuGGUGGa--------CGa-GGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 73270 | 0.76 | 0.263141 |
Target: 5'- ---cGGCGguuaaguucACCGCgUGCUCCGCCGCCc -3' miRNA: 3'- caucCUGC---------UGGUGgACGAGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 60008 | 0.75 | 0.301753 |
Target: 5'- -gGGGACGGCCggguccggagccGCgCUGCcgUCCGCCGCg -3' miRNA: 3'- caUCCUGCUGG------------UG-GACG--AGGCGGCGg -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 147660 | 0.74 | 0.308598 |
Target: 5'- -cGGGGCgGGCgGCCgGCUCCGCC-CCg -3' miRNA: 3'- caUCCUG-CUGgUGGaCGAGGCGGcGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 151695 | 0.74 | 0.308598 |
Target: 5'- -cGGGGgGGCCcgGgCUGC-CCGCCGCCa -3' miRNA: 3'- caUCCUgCUGG--UgGACGaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 3382 | 0.74 | 0.315561 |
Target: 5'- -cGGGACGGCCGCCaGg-UCGCCGUCg -3' miRNA: 3'- caUCCUGCUGGUGGaCgaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 77477 | 0.74 | 0.315561 |
Target: 5'- -gAGGcCGAcCCGCagaUGCUgCGCCGCCg -3' miRNA: 3'- caUCCuGCU-GGUGg--ACGAgGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 2660 | 0.74 | 0.322641 |
Target: 5'- -cAGGGCGGCgGCCgcggGCgCCGCCGUg -3' miRNA: 3'- caUCCUGCUGgUGGa---CGaGGCGGCGg -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 100621 | 0.74 | 0.32984 |
Target: 5'- gGUAGGuguguccgGCGAUCccgGCCUGCcgCCGCCGCUc -3' miRNA: 3'- -CAUCC--------UGCUGG---UGGACGa-GGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 57597 | 0.74 | 0.34459 |
Target: 5'- aGUuGGGCGGCCGCCaagGCcCCGCC-CCg -3' miRNA: 3'- -CAuCCUGCUGGUGGa--CGaGGCGGcGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 73996 | 0.73 | 0.352141 |
Target: 5'- -cGGGGCGGCC-CCgcaggggGCUCCG-CGCCc -3' miRNA: 3'- caUCCUGCUGGuGGa------CGAGGCgGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 21045 | 0.73 | 0.352141 |
Target: 5'- cGUAGG-UGACCuACCgUGCuacgUCCGCCGUCg -3' miRNA: 3'- -CAUCCuGCUGG-UGG-ACG----AGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 119868 | 0.73 | 0.352141 |
Target: 5'- gGgcGGGCGACgCGCCcGCccUCCGCUGCUg -3' miRNA: 3'- -CauCCUGCUG-GUGGaCG--AGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 144185 | 0.73 | 0.359808 |
Target: 5'- ---cGGCGGCCGCCgcaGCcgccgcagCCGCCGCCg -3' miRNA: 3'- caucCUGCUGGUGGa--CGa-------GGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 57760 | 0.73 | 0.367591 |
Target: 5'- -cGGGACgGGCCGCC-GUcccgUCCGCCGCa -3' miRNA: 3'- caUCCUG-CUGGUGGaCG----AGGCGGCGg -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 20348 | 0.72 | 0.408208 |
Target: 5'- aGgcGGGCGGCC-CUUGggCCGCcCGCCg -3' miRNA: 3'- -CauCCUGCUGGuGGACgaGGCG-GCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 114276 | 0.71 | 0.451516 |
Target: 5'- --uGGACGGgcCCGCCaUGCUCaCGCUGCa -3' miRNA: 3'- cauCCUGCU--GGUGG-ACGAG-GCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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