miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 103180 1.11 0.000959
Target:  5'- uGUAGGACGACCACCUGCUCCGCCGCCg -3'
miRNA:   3'- -CAUCCUGCUGGUGGACGAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 30740 0.76 0.245387
Target:  5'- --cGGG-GGCCGCCUcUUCCGCCGCCg -3'
miRNA:   3'- cauCCUgCUGGUGGAcGAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 94638 0.76 0.251192
Target:  5'- -gGGGGCGACgAUC-GC-CCGCCGCCu -3'
miRNA:   3'- caUCCUGCUGgUGGaCGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 23233 0.76 0.263141
Target:  5'- --cGGACG-CCGCCgacgcgcugGCggCCGCCGCCg -3'
miRNA:   3'- cauCCUGCuGGUGGa--------CGa-GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 73270 0.76 0.263141
Target:  5'- ---cGGCGguuaaguucACCGCgUGCUCCGCCGCCc -3'
miRNA:   3'- caucCUGC---------UGGUGgACGAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 60008 0.75 0.301753
Target:  5'- -gGGGACGGCCggguccggagccGCgCUGCcgUCCGCCGCg -3'
miRNA:   3'- caUCCUGCUGG------------UG-GACG--AGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 147660 0.74 0.308598
Target:  5'- -cGGGGCgGGCgGCCgGCUCCGCC-CCg -3'
miRNA:   3'- caUCCUG-CUGgUGGaCGAGGCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 151695 0.74 0.308598
Target:  5'- -cGGGGgGGCCcgGgCUGC-CCGCCGCCa -3'
miRNA:   3'- caUCCUgCUGG--UgGACGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3382 0.74 0.315561
Target:  5'- -cGGGACGGCCGCCaGg-UCGCCGUCg -3'
miRNA:   3'- caUCCUGCUGGUGGaCgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 77477 0.74 0.315561
Target:  5'- -gAGGcCGAcCCGCagaUGCUgCGCCGCCg -3'
miRNA:   3'- caUCCuGCU-GGUGg--ACGAgGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 2660 0.74 0.322641
Target:  5'- -cAGGGCGGCgGCCgcggGCgCCGCCGUg -3'
miRNA:   3'- caUCCUGCUGgUGGa---CGaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 100621 0.74 0.32984
Target:  5'- gGUAGGuguguccgGCGAUCccgGCCUGCcgCCGCCGCUc -3'
miRNA:   3'- -CAUCC--------UGCUGG---UGGACGa-GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 57597 0.74 0.34459
Target:  5'- aGUuGGGCGGCCGCCaagGCcCCGCC-CCg -3'
miRNA:   3'- -CAuCCUGCUGGUGGa--CGaGGCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 73996 0.73 0.352141
Target:  5'- -cGGGGCGGCC-CCgcaggggGCUCCG-CGCCc -3'
miRNA:   3'- caUCCUGCUGGuGGa------CGAGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 21045 0.73 0.352141
Target:  5'- cGUAGG-UGACCuACCgUGCuacgUCCGCCGUCg -3'
miRNA:   3'- -CAUCCuGCUGG-UGG-ACG----AGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 119868 0.73 0.352141
Target:  5'- gGgcGGGCGACgCGCCcGCccUCCGCUGCUg -3'
miRNA:   3'- -CauCCUGCUG-GUGGaCG--AGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 144185 0.73 0.359808
Target:  5'- ---cGGCGGCCGCCgcaGCcgccgcagCCGCCGCCg -3'
miRNA:   3'- caucCUGCUGGUGGa--CGa-------GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 57760 0.73 0.367591
Target:  5'- -cGGGACgGGCCGCC-GUcccgUCCGCCGCa -3'
miRNA:   3'- caUCCUG-CUGGUGGaCG----AGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 20348 0.72 0.408208
Target:  5'- aGgcGGGCGGCC-CUUGggCCGCcCGCCg -3'
miRNA:   3'- -CauCCUGCUGGuGGACgaGGCG-GCGG- -5'
5622 3' -59.7 NC_001806.1 + 114276 0.71 0.451516
Target:  5'- --uGGACGGgcCCGCCaUGCUCaCGCUGCa -3'
miRNA:   3'- cauCCUGCU--GGUGG-ACGAG-GCGGCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.