Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5622 | 3' | -59.7 | NC_001806.1 | + | 1339 | 0.66 | 0.760122 |
Target: 5'- -gGGGGCGugGCCaaGCCcGcCUCCGCCcCCa -3' miRNA: 3'- caUCCUGC--UGG--UGGaC-GAGGCGGcGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 2300 | 0.7 | 0.544889 |
Target: 5'- ---cGGCGGCCcccCCgagGCcCCGCCGCCg -3' miRNA: 3'- caucCUGCUGGu--GGa--CGaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 2660 | 0.74 | 0.322641 |
Target: 5'- -cAGGGCGGCgGCCgcggGCgCCGCCGUg -3' miRNA: 3'- caUCCUGCUGgUGGa---CGaGGCGGCGg -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 2700 | 0.67 | 0.693118 |
Target: 5'- -gGGGGCuGCCGCCg---CCaGCCGCCc -3' miRNA: 3'- caUCCUGcUGGUGGacgaGG-CGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 3000 | 0.69 | 0.566342 |
Target: 5'- -cGGcGGCGGCCGCCagcgcgucggcgGCguccggugcgcuggCCGCCGCCg -3' miRNA: 3'- caUC-CUGCUGGUGGa-----------CGa-------------GGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 3180 | 0.69 | 0.564382 |
Target: 5'- cGgcGGccACGGCgGCCUcGCUgCCGCCgGCCa -3' miRNA: 3'- -CauCC--UGCUGgUGGA-CGA-GGCGG-CGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 3382 | 0.74 | 0.315561 |
Target: 5'- -cGGGACGGCCGCCaGg-UCGCCGUCg -3' miRNA: 3'- caUCCUGCUGGUGGaCgaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 3645 | 0.67 | 0.683287 |
Target: 5'- -cGGcGGCGACCcccucgucAUCUGCgCCGgCGCCg -3' miRNA: 3'- caUC-CUGCUGG--------UGGACGaGGCgGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 3861 | 0.67 | 0.702902 |
Target: 5'- gGUGGGGC-ACgGCCcGCgccaCGCUGCCg -3' miRNA: 3'- -CAUCCUGcUGgUGGaCGag--GCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 4183 | 0.66 | 0.782033 |
Target: 5'- -gGGGGCGggggcccggcgccggGCCACg-GCUCC-CCGCUg -3' miRNA: 3'- caUCCUGC---------------UGGUGgaCGAGGcGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 4441 | 0.7 | 0.544889 |
Target: 5'- -gGGGGCGGcguCCGCCcggggGCUgCCGgCGCCg -3' miRNA: 3'- caUCCUGCU---GGUGGa----CGA-GGCgGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 5125 | 0.67 | 0.712629 |
Target: 5'- -cGGGGCG-CUGCUUGUucUCCGaCGCCa -3' miRNA: 3'- caUCCUGCuGGUGGACG--AGGCgGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 5324 | 0.68 | 0.673415 |
Target: 5'- -aGGGACGGCCGaucccCCUcccgcGCUUCGuCCGCg -3' miRNA: 3'- caUCCUGCUGGU-----GGA-----CGAGGC-GGCGg -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 5886 | 0.69 | 0.578135 |
Target: 5'- -cGGGACGgcgggcggcccaaggGCCGCCcGCcUUGCCGCCc -3' miRNA: 3'- caUCCUGC---------------UGGUGGaCGaGGCGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 9804 | 0.66 | 0.778429 |
Target: 5'- gGUGGGugGGCUcgGCCaaaUCCG-CGCCg -3' miRNA: 3'- -CAUCCugCUGG--UGGacgAGGCgGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 9986 | 0.7 | 0.55461 |
Target: 5'- --cGGA-GGCCGCCUGC-CaCGCCaGCCc -3' miRNA: 3'- cauCCUgCUGGUGGACGaG-GCGG-CGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 16489 | 0.69 | 0.584053 |
Target: 5'- -gGGGGCuuGCCGCCgcggcugaugGCUCgaGCCGCCu -3' miRNA: 3'- caUCCUGc-UGGUGGa---------CGAGg-CGGCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 19034 | 0.67 | 0.73188 |
Target: 5'- -gGGGuccauCGugCG-CUGCUCCGCCucuggGCCu -3' miRNA: 3'- caUCCu----GCugGUgGACGAGGCGG-----CGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 20348 | 0.72 | 0.408208 |
Target: 5'- aGgcGGGCGGCC-CUUGggCCGCcCGCCg -3' miRNA: 3'- -CauCCUGCUGGuGGACgaGGCG-GCGG- -5' |
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5622 | 3' | -59.7 | NC_001806.1 | + | 20730 | 0.66 | 0.741387 |
Target: 5'- -gGGGGCGggggGCCGgCgGcCUCCGCUGCUc -3' miRNA: 3'- caUCCUGC----UGGUgGaC-GAGGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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