miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 1339 0.66 0.760122
Target:  5'- -gGGGGCGugGCCaaGCCcGcCUCCGCCcCCa -3'
miRNA:   3'- caUCCUGC--UGG--UGGaC-GAGGCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 2300 0.7 0.544889
Target:  5'- ---cGGCGGCCcccCCgagGCcCCGCCGCCg -3'
miRNA:   3'- caucCUGCUGGu--GGa--CGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 2660 0.74 0.322641
Target:  5'- -cAGGGCGGCgGCCgcggGCgCCGCCGUg -3'
miRNA:   3'- caUCCUGCUGgUGGa---CGaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 2700 0.67 0.693118
Target:  5'- -gGGGGCuGCCGCCg---CCaGCCGCCc -3'
miRNA:   3'- caUCCUGcUGGUGGacgaGG-CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3000 0.69 0.566342
Target:  5'- -cGGcGGCGGCCGCCagcgcgucggcgGCguccggugcgcuggCCGCCGCCg -3'
miRNA:   3'- caUC-CUGCUGGUGGa-----------CGa-------------GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3180 0.69 0.564382
Target:  5'- cGgcGGccACGGCgGCCUcGCUgCCGCCgGCCa -3'
miRNA:   3'- -CauCC--UGCUGgUGGA-CGA-GGCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 3382 0.74 0.315561
Target:  5'- -cGGGACGGCCGCCaGg-UCGCCGUCg -3'
miRNA:   3'- caUCCUGCUGGUGGaCgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3645 0.67 0.683287
Target:  5'- -cGGcGGCGACCcccucgucAUCUGCgCCGgCGCCg -3'
miRNA:   3'- caUC-CUGCUGG--------UGGACGaGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3861 0.67 0.702902
Target:  5'- gGUGGGGC-ACgGCCcGCgccaCGCUGCCg -3'
miRNA:   3'- -CAUCCUGcUGgUGGaCGag--GCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 4183 0.66 0.782033
Target:  5'- -gGGGGCGggggcccggcgccggGCCACg-GCUCC-CCGCUg -3'
miRNA:   3'- caUCCUGC---------------UGGUGgaCGAGGcGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 4441 0.7 0.544889
Target:  5'- -gGGGGCGGcguCCGCCcggggGCUgCCGgCGCCg -3'
miRNA:   3'- caUCCUGCU---GGUGGa----CGA-GGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 5125 0.67 0.712629
Target:  5'- -cGGGGCG-CUGCUUGUucUCCGaCGCCa -3'
miRNA:   3'- caUCCUGCuGGUGGACG--AGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 5324 0.68 0.673415
Target:  5'- -aGGGACGGCCGaucccCCUcccgcGCUUCGuCCGCg -3'
miRNA:   3'- caUCCUGCUGGU-----GGA-----CGAGGC-GGCGg -5'
5622 3' -59.7 NC_001806.1 + 5886 0.69 0.578135
Target:  5'- -cGGGACGgcgggcggcccaaggGCCGCCcGCcUUGCCGCCc -3'
miRNA:   3'- caUCCUGC---------------UGGUGGaCGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 9804 0.66 0.778429
Target:  5'- gGUGGGugGGCUcgGCCaaaUCCG-CGCCg -3'
miRNA:   3'- -CAUCCugCUGG--UGGacgAGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 9986 0.7 0.55461
Target:  5'- --cGGA-GGCCGCCUGC-CaCGCCaGCCc -3'
miRNA:   3'- cauCCUgCUGGUGGACGaG-GCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 16489 0.69 0.584053
Target:  5'- -gGGGGCuuGCCGCCgcggcugaugGCUCgaGCCGCCu -3'
miRNA:   3'- caUCCUGc-UGGUGGa---------CGAGg-CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 19034 0.67 0.73188
Target:  5'- -gGGGuccauCGugCG-CUGCUCCGCCucuggGCCu -3'
miRNA:   3'- caUCCu----GCugGUgGACGAGGCGG-----CGG- -5'
5622 3' -59.7 NC_001806.1 + 20348 0.72 0.408208
Target:  5'- aGgcGGGCGGCC-CUUGggCCGCcCGCCg -3'
miRNA:   3'- -CauCCUGCUGGuGGACgaGGCG-GCGG- -5'
5622 3' -59.7 NC_001806.1 + 20730 0.66 0.741387
Target:  5'- -gGGGGCGggggGCCGgCgGcCUCCGCUGCUc -3'
miRNA:   3'- caUCCUGC----UGGUgGaC-GAGGCGGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.