miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 24095 0.66 0.759195
Target:  5'- -cAGGGCGugCugCUGCUguccaCGCgggaccuggccuuCGCCg -3'
miRNA:   3'- caUCCUGCugGugGACGAg----GCG-------------GCGG- -5'
5622 3' -59.7 NC_001806.1 + 116471 0.66 0.750804
Target:  5'- --cGGACGugCGCCUGgaUUCGCUGgaCCu -3'
miRNA:   3'- cauCCUGCugGUGGACg-AGGCGGC--GG- -5'
5622 3' -59.7 NC_001806.1 + 84076 0.66 0.750804
Target:  5'- -cGGGGCc-CCAgCUGCgcgCUGCCGCg -3'
miRNA:   3'- caUCCUGcuGGUgGACGa--GGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 71936 0.66 0.749867
Target:  5'- -gGGGcgaguggacgcgcGCGACCGcgggcCCUGggCCGCCGCg -3'
miRNA:   3'- caUCC-------------UGCUGGU-----GGACgaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 23566 0.66 0.741387
Target:  5'- -cGGGGCccaGCCACaCggcgGCgcccgcggCCGCCGCCc -3'
miRNA:   3'- caUCCUGc--UGGUG-Ga---CGa-------GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 69995 0.66 0.741387
Target:  5'- -gGGGACGcgcugaggGCCACgUGUagCGCgGCCu -3'
miRNA:   3'- caUCCUGC--------UGGUGgACGagGCGgCGG- -5'
5622 3' -59.7 NC_001806.1 + 20730 0.66 0.741387
Target:  5'- -gGGGGCGggggGCCGgCgGcCUCCGCUGCUc -3'
miRNA:   3'- caUCCUGC----UGGUgGaC-GAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 73460 0.66 0.741387
Target:  5'- -cGGGGUGGCCgGCCcGg-CCGCCGCCc -3'
miRNA:   3'- caUCCUGCUGG-UGGaCgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 122425 0.66 0.741387
Target:  5'- -cAGGaACGugUugACCUGCUCCGCgugGUCc -3'
miRNA:   3'- caUCC-UGCugG--UGGACGAGGCGg--CGG- -5'
5622 3' -59.7 NC_001806.1 + 27245 0.66 0.738544
Target:  5'- -cAGGGCgGGCCGCCUcgggggcgggacugGCcaaucggCgGCCGCCa -3'
miRNA:   3'- caUCCUG-CUGGUGGA--------------CGa------GgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 44751 0.67 0.73188
Target:  5'- -gGGGGCG-CCAgUUGCgggaaCUGCCGCa -3'
miRNA:   3'- caUCCUGCuGGUgGACGa----GGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 19034 0.67 0.73188
Target:  5'- -gGGGuccauCGugCG-CUGCUCCGCCucuggGCCu -3'
miRNA:   3'- caUCCu----GCugGUgGACGAGGCGG-----CGG- -5'
5622 3' -59.7 NC_001806.1 + 92646 0.67 0.73188
Target:  5'- --uGGACGGCCcuccaacgcaACCaGCUUC-CCGCCc -3'
miRNA:   3'- cauCCUGCUGG----------UGGaCGAGGcGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 123789 0.67 0.722291
Target:  5'- -cAGGACG-CCGCCgucucccGCUCCucccacgggucCCGCCa -3'
miRNA:   3'- caUCCUGCuGGUGGa------CGAGGc----------GGCGG- -5'
5622 3' -59.7 NC_001806.1 + 118753 0.67 0.722291
Target:  5'- -cGGGAauccccUGGCCGCCcugaUGCgCgGCCGCCc -3'
miRNA:   3'- caUCCU------GCUGGUGG----ACGaGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 108553 0.67 0.722291
Target:  5'- --uGGccGCGcCCGCC-GCUCCGCgGUCa -3'
miRNA:   3'- cauCC--UGCuGGUGGaCGAGGCGgCGG- -5'
5622 3' -59.7 NC_001806.1 + 49592 0.67 0.722291
Target:  5'- -gAGGACGGCggcgggGCCcGUUCC-CCGCCc -3'
miRNA:   3'- caUCCUGCUGg-----UGGaCGAGGcGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 132186 0.67 0.716502
Target:  5'- cGUGGGcgcgccugGCGGCCAUUcgcgacaccccccagUGCgcgUCCGCCGCUu -3'
miRNA:   3'- -CAUCC--------UGCUGGUGG---------------ACG---AGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 5125 0.67 0.712629
Target:  5'- -cGGGGCG-CUGCUUGUucUCCGaCGCCa -3'
miRNA:   3'- caUCCUGCuGGUGGACG--AGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 78596 0.67 0.712629
Target:  5'- -cGGGccagcACG-UCGCCgUGCcggCCGCCGCCa -3'
miRNA:   3'- caUCC-----UGCuGGUGG-ACGa--GGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.