miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 3' -54 NC_001806.1 + 102917 1.07 0.005133
Target:  5'- cGUUGCGCACGAUCUGGACCUCCAUCUc -3'
miRNA:   3'- -CAACGCGUGCUAGACCUGGAGGUAGA- -5'
5623 3' -54 NC_001806.1 + 113850 0.77 0.409128
Target:  5'- --gGCGCGCGGccCUGGACCgCCAUCg -3'
miRNA:   3'- caaCGCGUGCUa-GACCUGGaGGUAGa -5'
5623 3' -54 NC_001806.1 + 112708 0.75 0.542935
Target:  5'- -gUGCGCGCgGAUCUGGugU-CCAUCg -3'
miRNA:   3'- caACGCGUG-CUAGACCugGaGGUAGa -5'
5623 3' -54 NC_001806.1 + 50209 0.72 0.71877
Target:  5'- -gUGCGCGCGcugCUGGACCgcgaCUGUCg -3'
miRNA:   3'- caACGCGUGCua-GACCUGGa---GGUAGa -5'
5623 3' -54 NC_001806.1 + 7124 0.71 0.738859
Target:  5'- --cGCGCAUGAUCUccGGACC-CCcgCa -3'
miRNA:   3'- caaCGCGUGCUAGA--CCUGGaGGuaGa -5'
5623 3' -54 NC_001806.1 + 52908 0.71 0.758561
Target:  5'- --gGCGCGCGucUCUGGggaGCCUCgAUCg -3'
miRNA:   3'- caaCGCGUGCu-AGACC---UGGAGgUAGa -5'
5623 3' -54 NC_001806.1 + 135046 0.7 0.823347
Target:  5'- --gGCGacCGCGAUCUGGACCggcCCcgCg -3'
miRNA:   3'- caaCGC--GUGCUAGACCUGGa--GGuaGa -5'
5623 3' -54 NC_001806.1 + 116476 0.69 0.831949
Target:  5'- -gUGCGcCugGAUucgCUGGACCUCaCGUUg -3'
miRNA:   3'- caACGC-GugCUA---GACCUGGAG-GUAGa -5'
5623 3' -54 NC_001806.1 + 124313 0.69 0.840361
Target:  5'- --cGCGUACGAcaUGGACCUCgGUa- -3'
miRNA:   3'- caaCGCGUGCUagACCUGGAGgUAga -5'
5623 3' -54 NC_001806.1 + 1647 0.68 0.87197
Target:  5'- --gGCGUGCGAg-UGGGCCUCCuccUCg -3'
miRNA:   3'- caaCGCGUGCUagACCUGGAGGu--AGa -5'
5623 3' -54 NC_001806.1 + 52070 0.68 0.900009
Target:  5'- --cGCGCGCcAUCUGGACCggggucCCAg-- -3'
miRNA:   3'- caaCGCGUGcUAGACCUGGa-----GGUaga -5'
5623 3' -54 NC_001806.1 + 84327 0.67 0.906424
Target:  5'- -cUGCGCA-GAcUCcGGGCCUCCGUg- -3'
miRNA:   3'- caACGCGUgCU-AGaCCUGGAGGUAga -5'
5623 3' -54 NC_001806.1 + 113024 0.67 0.924194
Target:  5'- cGUUGaCGCgGCGGUCggGGGCCUuaaccgcgaccCCGUCg -3'
miRNA:   3'- -CAAC-GCG-UGCUAGa-CCUGGA-----------GGUAGa -5'
5623 3' -54 NC_001806.1 + 76255 0.66 0.943955
Target:  5'- --gGCGCGCGAUCggaagcguggcgcUGGACCUggCCGc-- -3'
miRNA:   3'- caaCGCGUGCUAG-------------ACCUGGA--GGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.