Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5623 | 5' | -67.6 | NC_001806.1 | + | 127211 | 0.65 | 0.469989 |
Target: 5'- gCGGGcCCCGGGGagacaGCGCcugcguucaucggaCCCCCCcUCGc -3' miRNA: 3'- gGUCU-GGGCCCC-----CGCG--------------GGGGGGcAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 73453 | 0.66 | 0.447245 |
Target: 5'- cCCAGGCCgGGGuGGCcgGCCCggCCGcCGc -3' miRNA: 3'- -GGUCUGGgCCC-CCG--CGGGggGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 108357 | 0.66 | 0.447245 |
Target: 5'- uUCAGGcCCCGGuGGuGcCGCUCCCCCa--- -3' miRNA: 3'- -GGUCU-GGGCC-CC-C-GCGGGGGGGcagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 118892 | 0.66 | 0.430798 |
Target: 5'- gCGGAUgCGGuGGGggaGCUucuggCCCCCGUCGu -3' miRNA: 3'- gGUCUGgGCC-CCCg--CGG-----GGGGGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 30728 | 0.66 | 0.430798 |
Target: 5'- cCCcGACCCccgcGGGGGcCGCCuCUUCCGcCGc -3' miRNA: 3'- -GGuCUGGG----CCCCC-GCGG-GGGGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 28526 | 0.66 | 0.438156 |
Target: 5'- -aGGGCCCGGGGuCGCcgugggaCCCCCUGacUCa -3' miRNA: 3'- ggUCUGGGCCCCcGCG-------GGGGGGC--AGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 67432 | 0.66 | 0.430798 |
Target: 5'- gUCAGcGCCCcaGGGGGCGCgUCUgugCCGUCc -3' miRNA: 3'- -GGUC-UGGG--CCCCCGCGgGGG---GGCAGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 121850 | 0.66 | 0.430798 |
Target: 5'- aCCAG-CgCCGGGuGGCGCCUgUgUGUCu -3' miRNA: 3'- -GGUCuG-GGCCC-CCGCGGGgGgGCAGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 4434 | 0.66 | 0.438978 |
Target: 5'- cCCGGGCggGGGcGGCGUCCgCCCGg-- -3' miRNA: 3'- -GGUCUGggCCC-CCGCGGGgGGGCagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 33128 | 0.66 | 0.430798 |
Target: 5'- cCCGGACCgccgcgguCGGGGGC-CCCUcguCCCGggcCGu -3' miRNA: 3'- -GGUCUGG--------GCCCCCGcGGGG---GGGCa--GC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 4341 | 0.66 | 0.422709 |
Target: 5'- gCGGGCCCGGcGGCGCUCgaugcggCCCG-CGg -3' miRNA: 3'- gGUCUGGGCCcCCGCGGGg------GGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 79178 | 0.66 | 0.4203 |
Target: 5'- gCUAuuCCCGGGGcauccgguguaccaGCGCgCCCCCGaCGa -3' miRNA: 3'- -GGUcuGGGCCCC--------------CGCGgGGGGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 137641 | 0.66 | 0.447245 |
Target: 5'- aCGGACCCuGGgguuggccgaGGGCGCCCugacgcgguuggCCCCGg-- -3' miRNA: 3'- gGUCUGGG-CC----------CCCGCGGG------------GGGGCagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 55255 | 0.66 | 0.430798 |
Target: 5'- gUCGGcGCCCGGGccGGC-CCCCUCCGcCc -3' miRNA: 3'- -GGUC-UGGGCCC--CCGcGGGGGGGCaGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 24891 | 0.66 | 0.454759 |
Target: 5'- -aGGugCUGGGGGCggaggcgggcuugGCCacgCCCCCG-CGg -3' miRNA: 3'- ggUCugGGCCCCCG-------------CGG---GGGGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 60592 | 0.66 | 0.429985 |
Target: 5'- cCCGGGacguuaCCGGGGGCcaccccgGCCCCaggUCGUCc -3' miRNA: 3'- -GGUCUg-----GGCCCCCG-------CGGGGg--GGCAGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 108714 | 0.66 | 0.430798 |
Target: 5'- aCGuGCUCGGGGGagaucaCCCCCCCGgggaCGg -3' miRNA: 3'- gGUcUGGGCCCCCgc----GGGGGGGCa---GC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 72634 | 0.66 | 0.430798 |
Target: 5'- uCCgAGAcauCCCGGGGGacgGCCggUCCGUCGg -3' miRNA: 3'- -GG-UCU---GGGCCCCCg--CGGggGGGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 44842 | 0.66 | 0.430798 |
Target: 5'- gCAGGguCCCGGGGGCaaaUUCCCgCGUCc -3' miRNA: 3'- gGUCU--GGGCCCCCGc--GGGGGgGCAGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 24038 | 0.66 | 0.428362 |
Target: 5'- aCGGccGCCUGGGcgggcaauuggaccGGCGCCCCCgacgUGUCGg -3' miRNA: 3'- gGUC--UGGGCCC--------------CCGCGGGGGg---GCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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