miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 102952 1.08 0.000441
Target:  5'- gCCAGACCCGGGGGCGCCCCCCCGUCGc -3'
miRNA:   3'- -GGUCUGGGCCCCCGCGGGGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 29168 0.82 0.03667
Target:  5'- -aAGACCCcggcaguugcGGGGGCGCCCCCCC-UCGa -3'
miRNA:   3'- ggUCUGGG----------CCCCCGCGGGGGGGcAGC- -5'
5623 5' -67.6 NC_001806.1 + 71368 0.82 0.037594
Target:  5'- gCGGACCgcgaGGGGGCGCCucauuccaacaCCCCCGUCGa -3'
miRNA:   3'- gGUCUGGg---CCCCCGCGG-----------GGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 65467 0.82 0.039511
Target:  5'- cCCGGGuCCUGGGGGCGCCCgcgcaccacguCUCCGUCGa -3'
miRNA:   3'- -GGUCU-GGGCCCCCGCGGG-----------GGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 94805 0.79 0.057268
Target:  5'- cCCGGACgCgGGGGGCgacgggcaGCCCCaCCCGUCGc -3'
miRNA:   3'- -GGUCUG-GgCCCCCG--------CGGGG-GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 29696 0.75 0.118566
Target:  5'- gCGGGCCggggaGGGGGCGUaaccugaucgcgCCCCCCGUUGu -3'
miRNA:   3'- gGUCUGGg----CCCCCGCG------------GGGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 64835 0.75 0.124335
Target:  5'- cCCAGACguggCCGGGGGUccgaaaGCCCCUCCGcgCGu -3'
miRNA:   3'- -GGUCUG----GGCCCCCG------CGGGGGGGCa-GC- -5'
5623 5' -67.6 NC_001806.1 + 44117 0.73 0.1501
Target:  5'- cCCGGucccgcgcucGCUCGGGGGgGCCUCCgCGUCa -3'
miRNA:   3'- -GGUC----------UGGGCCCCCgCGGGGGgGCAGc -5'
5623 5' -67.6 NC_001806.1 + 148120 0.73 0.157261
Target:  5'- gCCGG-CUgGGGGGCugcgugagacGCCCCgCCCGUCa -3'
miRNA:   3'- -GGUCuGGgCCCCCG----------CGGGG-GGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 79937 0.73 0.172516
Target:  5'- aCCGGcacgguuuuGCCCGGGGGCGaaaaccgccgCCCCCCGcuaaccUCGg -3'
miRNA:   3'- -GGUC---------UGGGCCCCCGCg---------GGGGGGC------AGC- -5'
5623 5' -67.6 NC_001806.1 + 147307 0.72 0.180629
Target:  5'- cCCGGGCCCacccuGGccGCGCCCCCCCGg-- -3'
miRNA:   3'- -GGUCUGGG-----CCccCGCGGGGGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 72136 0.72 0.180629
Target:  5'- gCCGG-CCCGuGGGCccuGCgCCCCCUGUCGu -3'
miRNA:   3'- -GGUCuGGGCcCCCG---CG-GGGGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 56522 0.72 0.184812
Target:  5'- gCAGGCCCGGGcccGGCGUUCCCCgGg-- -3'
miRNA:   3'- gGUCUGGGCCC---CCGCGGGGGGgCagc -5'
5623 5' -67.6 NC_001806.1 + 74907 0.72 0.186508
Target:  5'- gUCGGACCUccccgaggccguucgGGGGGCGCCCCCUgagGUUa -3'
miRNA:   3'- -GGUCUGGG---------------CCCCCGCGGGGGGg--CAGc -5'
5623 5' -67.6 NC_001806.1 + 83482 0.72 0.189079
Target:  5'- gCCAaauGCCUGGGGGCGCCCCaCUG-CGc -3'
miRNA:   3'- -GGUc--UGGGCCCCCGCGGGGgGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 119303 0.72 0.197874
Target:  5'- gCAGACCCGcccaucgucGGGGCGuccgaCCCCCCCaUCu -3'
miRNA:   3'- gGUCUGGGC---------CCCCGC-----GGGGGGGcAGc -5'
5623 5' -67.6 NC_001806.1 + 86738 0.72 0.197874
Target:  5'- -aGGGCCCGGGGGCGCgCa--UGUCGg -3'
miRNA:   3'- ggUCUGGGCCCCCGCGgGgggGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 29137 0.72 0.202404
Target:  5'- gCGGuCUCGGGGGgGagcCCCCCCCG-CGa -3'
miRNA:   3'- gGUCuGGGCCCCCgC---GGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 57039 0.72 0.202404
Target:  5'- gCCGGGCCCGGGgccGGgGCCCCCggCUG-CGu -3'
miRNA:   3'- -GGUCUGGGCCC---CCgCGGGGG--GGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 1427 0.72 0.202404
Target:  5'- cCCAGcgaauCCCGGGcGGCgccggcggcaggGCCCCCgggCCGUCGu -3'
miRNA:   3'- -GGUCu----GGGCCC-CCG------------CGGGGG---GGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.