Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5623 | 5' | -67.6 | NC_001806.1 | + | 798 | 0.7 | 0.2567 |
Target: 5'- gUCAGAgauccaaacccUCCGGGGGCGCCCgcgcaccaccaccgCCCC-UCGc -3' miRNA: 3'- -GGUCU-----------GGGCCCCCGCGGG--------------GGGGcAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 1427 | 0.72 | 0.202404 |
Target: 5'- cCCAGcgaauCCCGGGcGGCgccggcggcaggGCCCCCgggCCGUCGu -3' miRNA: 3'- -GGUCu----GGGCCC-CCG------------CGGGGG---GGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 2690 | 0.67 | 0.375412 |
Target: 5'- gCUGGGcCCCGGGGGCuGCCgCCgCCagccgcccaggggGUCGg -3' miRNA: 3'- -GGUCU-GGGCCCCCG-CGGgGG-GG-------------CAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 2880 | 0.68 | 0.340097 |
Target: 5'- uCC-GAgCCGGGGGCGUCCgCgCCGcUCu -3' miRNA: 3'- -GGuCUgGGCCCCCGCGGGgG-GGC-AGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 2947 | 0.67 | 0.398224 |
Target: 5'- gCCGGGCCgGGccGGgacucuugcgcuuGCGCCCCuCCCG-CGg -3' miRNA: 3'- -GGUCUGGgCC--CC-------------CGCGGGG-GGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 3374 | 0.68 | 0.354215 |
Target: 5'- gCCAGcCCCGGGacGGcCGCCagguCgCCGUCGa -3' miRNA: 3'- -GGUCuGGGCCC--CC-GCGGg---GgGGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 3469 | 0.67 | 0.391287 |
Target: 5'- gCCGG-CCUGGGcgcGGCGCCCggCgUCGUCGu -3' miRNA: 3'- -GGUCuGGGCCC---CCGCGGG--GgGGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 3626 | 0.68 | 0.340097 |
Target: 5'- cCCGGugCggcggcggcgaCGGcGGCGaCCCCCUCGUCa -3' miRNA: 3'- -GGUCugG-----------GCCcCCGC-GGGGGGGCAGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 4341 | 0.66 | 0.422709 |
Target: 5'- gCGGGCCCGGcGGCGCUCgaugcggCCCG-CGg -3' miRNA: 3'- gGUCUGGGCCcCCGCGGGg------GGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 4434 | 0.66 | 0.438978 |
Target: 5'- cCCGGGCggGGGcGGCGUCCgCCCGg-- -3' miRNA: 3'- -GGUCUGggCCC-CCGCGGGgGGGCagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 4944 | 0.72 | 0.202404 |
Target: 5'- gUCGGuGCCCGccgcGGGgGCCCUCCCGUCc -3' miRNA: 3'- -GGUC-UGGGCc---CCCgCGGGGGGGCAGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 5048 | 0.66 | 0.455598 |
Target: 5'- gCCccACCCGaGGGCcCCCCgCUCGUCGc -3' miRNA: 3'- -GGucUGGGCcCCCGcGGGG-GGGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 5079 | 0.66 | 0.464035 |
Target: 5'- uCUGGGCUCGGgguGGGCGgCggCCCGUCGg -3' miRNA: 3'- -GGUCUGGGCC---CCCGCgGggGGGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 5588 | 0.68 | 0.354215 |
Target: 5'- gCCGGcACgCCGGGGGCccgugGCCgCggCCCGUUGg -3' miRNA: 3'- -GGUC-UG-GGCCCCCG-----CGGgG--GGGCAGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 6083 | 0.67 | 0.414712 |
Target: 5'- gCGGGCCCGGGcGGCggggggcggGUCUCUCCGgCGc -3' miRNA: 3'- gGUCUGGGCCC-CCG---------CGGGGGGGCaGC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 6290 | 0.67 | 0.391287 |
Target: 5'- gCGGACgCGGGGGggaaagaccCGCCCaCCCCa--- -3' miRNA: 3'- gGUCUGgGCCCCC---------GCGGG-GGGGcagc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 19905 | 0.69 | 0.313098 |
Target: 5'- gUCGGAggccCCCGGGGuGCGUCCCCUguguuuCGUgGg -3' miRNA: 3'- -GGUCU----GGGCCCC-CGCGGGGGG------GCAgC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 20473 | 0.68 | 0.354215 |
Target: 5'- uCgGGGCCCGGGcccCGCCCCcugCCCGUUc -3' miRNA: 3'- -GgUCUGGGCCCcc-GCGGGG---GGGCAGc -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 21796 | 0.71 | 0.236685 |
Target: 5'- gCCGGcagccCCCGGGcGGaCGCCgCCCCCGccCGg -3' miRNA: 3'- -GGUCu----GGGCCC-CC-GCGG-GGGGGCa-GC- -5' |
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5623 | 5' | -67.6 | NC_001806.1 | + | 21857 | 0.66 | 0.455598 |
Target: 5'- cCCaAGcCCCGGGcGGCGgCgaggaCCCCCG-CGg -3' miRNA: 3'- -GG-UCuGGGCCC-CCGCgG-----GGGGGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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