miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5623 5' -67.6 NC_001806.1 + 798 0.7 0.2567
Target:  5'- gUCAGAgauccaaacccUCCGGGGGCGCCCgcgcaccaccaccgCCCC-UCGc -3'
miRNA:   3'- -GGUCU-----------GGGCCCCCGCGGG--------------GGGGcAGC- -5'
5623 5' -67.6 NC_001806.1 + 1427 0.72 0.202404
Target:  5'- cCCAGcgaauCCCGGGcGGCgccggcggcaggGCCCCCgggCCGUCGu -3'
miRNA:   3'- -GGUCu----GGGCCC-CCG------------CGGGGG---GGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 2690 0.67 0.375412
Target:  5'- gCUGGGcCCCGGGGGCuGCCgCCgCCagccgcccaggggGUCGg -3'
miRNA:   3'- -GGUCU-GGGCCCCCG-CGGgGG-GG-------------CAGC- -5'
5623 5' -67.6 NC_001806.1 + 2880 0.68 0.340097
Target:  5'- uCC-GAgCCGGGGGCGUCCgCgCCGcUCu -3'
miRNA:   3'- -GGuCUgGGCCCCCGCGGGgG-GGC-AGc -5'
5623 5' -67.6 NC_001806.1 + 2947 0.67 0.398224
Target:  5'- gCCGGGCCgGGccGGgacucuugcgcuuGCGCCCCuCCCG-CGg -3'
miRNA:   3'- -GGUCUGGgCC--CC-------------CGCGGGG-GGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 3374 0.68 0.354215
Target:  5'- gCCAGcCCCGGGacGGcCGCCagguCgCCGUCGa -3'
miRNA:   3'- -GGUCuGGGCCC--CC-GCGGg---GgGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 3469 0.67 0.391287
Target:  5'- gCCGG-CCUGGGcgcGGCGCCCggCgUCGUCGu -3'
miRNA:   3'- -GGUCuGGGCCC---CCGCGGG--GgGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 3626 0.68 0.340097
Target:  5'- cCCGGugCggcggcggcgaCGGcGGCGaCCCCCUCGUCa -3'
miRNA:   3'- -GGUCugG-----------GCCcCCGC-GGGGGGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 4341 0.66 0.422709
Target:  5'- gCGGGCCCGGcGGCGCUCgaugcggCCCG-CGg -3'
miRNA:   3'- gGUCUGGGCCcCCGCGGGg------GGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 4434 0.66 0.438978
Target:  5'- cCCGGGCggGGGcGGCGUCCgCCCGg-- -3'
miRNA:   3'- -GGUCUGggCCC-CCGCGGGgGGGCagc -5'
5623 5' -67.6 NC_001806.1 + 4944 0.72 0.202404
Target:  5'- gUCGGuGCCCGccgcGGGgGCCCUCCCGUCc -3'
miRNA:   3'- -GGUC-UGGGCc---CCCgCGGGGGGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 5048 0.66 0.455598
Target:  5'- gCCccACCCGaGGGCcCCCCgCUCGUCGc -3'
miRNA:   3'- -GGucUGGGCcCCCGcGGGG-GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 5079 0.66 0.464035
Target:  5'- uCUGGGCUCGGgguGGGCGgCggCCCGUCGg -3'
miRNA:   3'- -GGUCUGGGCC---CCCGCgGggGGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 5588 0.68 0.354215
Target:  5'- gCCGGcACgCCGGGGGCccgugGCCgCggCCCGUUGg -3'
miRNA:   3'- -GGUC-UG-GGCCCCCG-----CGGgG--GGGCAGC- -5'
5623 5' -67.6 NC_001806.1 + 6083 0.67 0.414712
Target:  5'- gCGGGCCCGGGcGGCggggggcggGUCUCUCCGgCGc -3'
miRNA:   3'- gGUCUGGGCCC-CCG---------CGGGGGGGCaGC- -5'
5623 5' -67.6 NC_001806.1 + 6290 0.67 0.391287
Target:  5'- gCGGACgCGGGGGggaaagaccCGCCCaCCCCa--- -3'
miRNA:   3'- gGUCUGgGCCCCC---------GCGGG-GGGGcagc -5'
5623 5' -67.6 NC_001806.1 + 19905 0.69 0.313098
Target:  5'- gUCGGAggccCCCGGGGuGCGUCCCCUguguuuCGUgGg -3'
miRNA:   3'- -GGUCU----GGGCCCC-CGCGGGGGG------GCAgC- -5'
5623 5' -67.6 NC_001806.1 + 20473 0.68 0.354215
Target:  5'- uCgGGGCCCGGGcccCGCCCCcugCCCGUUc -3'
miRNA:   3'- -GgUCUGGGCCCcc-GCGGGG---GGGCAGc -5'
5623 5' -67.6 NC_001806.1 + 21796 0.71 0.236685
Target:  5'- gCCGGcagccCCCGGGcGGaCGCCgCCCCCGccCGg -3'
miRNA:   3'- -GGUCu----GGGCCC-CC-GCGG-GGGGGCa-GC- -5'
5623 5' -67.6 NC_001806.1 + 21857 0.66 0.455598
Target:  5'- cCCaAGcCCCGGGcGGCGgCgaggaCCCCCG-CGg -3'
miRNA:   3'- -GG-UCuGGGCCC-CCGCgG-----GGGGGCaGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.