miRNA display CGI


Results 1 - 20 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5625 5' -61.3 NC_001806.1 + 127882 0.66 0.650007
Target:  5'- cGCCUGUgauacagauagGCGCgggugCAGCGgagcacGGCCAuGCCg -3'
miRNA:   3'- aCGGACGa----------CGCG-----GUCGU------CCGGUuCGG- -5'
5625 5' -61.3 NC_001806.1 + 147501 0.66 0.650007
Target:  5'- cGCCggaggggGCgGCGCC-GCGGGa-GGGCCc -3'
miRNA:   3'- aCGGa------CGaCGCGGuCGUCCggUUCGG- -5'
5625 5' -61.3 NC_001806.1 + 11102 0.66 0.650007
Target:  5'- cGCCUuaaaUGCGCC-GCGGGCCcucuccccGGCUu -3'
miRNA:   3'- aCGGAcg--ACGCGGuCGUCCGGu-------UCGG- -5'
5625 5' -61.3 NC_001806.1 + 22821 0.66 0.650007
Target:  5'- cGCCUGCcGCGggauCCuGgAGGCgCuGGCCg -3'
miRNA:   3'- aCGGACGaCGC----GGuCgUCCG-GuUCGG- -5'
5625 5' -61.3 NC_001806.1 + 59831 0.66 0.650007
Target:  5'- aGCCgGUUGUGUUuggAGCcaAGGCCAuccuGGCCc -3'
miRNA:   3'- aCGGaCGACGCGG---UCG--UCCGGU----UCGG- -5'
5625 5' -61.3 NC_001806.1 + 138771 0.66 0.650007
Target:  5'- gUGCCgacGCagGCGUCGGUAauGGCCGAcGCa -3'
miRNA:   3'- -ACGGa--CGa-CGCGGUCGU--CCGGUU-CGg -5'
5625 5' -61.3 NC_001806.1 + 3301 0.66 0.650007
Target:  5'- gGCgUGCgGCGgCGGCGGggaaGCgGGGCCc -3'
miRNA:   3'- aCGgACGaCGCgGUCGUC----CGgUUCGG- -5'
5625 5' -61.3 NC_001806.1 + 139201 0.66 0.650007
Target:  5'- uUGCCUuugcggacgaGCUGCGgaggCGGCAcgcgacGGCCAacguGGCCg -3'
miRNA:   3'- -ACGGA----------CGACGCg---GUCGU------CCGGU----UCGG- -5'
5625 5' -61.3 NC_001806.1 + 5587 0.66 0.639935
Target:  5'- cGCCgGCa-CGCCGG-GGGCCcguGGCCg -3'
miRNA:   3'- aCGGaCGacGCGGUCgUCCGGu--UCGG- -5'
5625 5' -61.3 NC_001806.1 + 117870 0.66 0.639935
Target:  5'- aGCggGCgaUGUCGGCggGGGCCGAGCCc -3'
miRNA:   3'- aCGgaCGacGCGGUCG--UCCGGUUCGG- -5'
5625 5' -61.3 NC_001806.1 + 124505 0.66 0.639935
Target:  5'- cGCC-GuCUcGCuCCGGCGGGCCGuccucGCCg -3'
miRNA:   3'- aCGGaC-GA-CGcGGUCGUCCGGUu----CGG- -5'
5625 5' -61.3 NC_001806.1 + 3808 0.66 0.638927
Target:  5'- cGCC-GCgUGCGCCaggccccagccgaAGC-GGCC-GGCCg -3'
miRNA:   3'- aCGGaCG-ACGCGG-------------UCGuCCGGuUCGG- -5'
5625 5' -61.3 NC_001806.1 + 21914 0.66 0.629856
Target:  5'- cGCCggGCccGCGCgGcGguGGCC-GGCCg -3'
miRNA:   3'- aCGGa-CGa-CGCGgU-CguCCGGuUCGG- -5'
5625 5' -61.3 NC_001806.1 + 10860 0.66 0.629856
Target:  5'- gGUCggGCcGCGCCccGUAGGCCccgGAGCUg -3'
miRNA:   3'- aCGGa-CGaCGCGGu-CGUCCGG---UUCGG- -5'
5625 5' -61.3 NC_001806.1 + 46421 0.66 0.629856
Target:  5'- cGUCUuCUGCGCC-GC-GGUCGGGCg -3'
miRNA:   3'- aCGGAcGACGCGGuCGuCCGGUUCGg -5'
5625 5' -61.3 NC_001806.1 + 120099 0.66 0.629856
Target:  5'- gUGCCU-CcGgGCCcu-GGGCCAGGCCa -3'
miRNA:   3'- -ACGGAcGaCgCGGucgUCCGGUUCGG- -5'
5625 5' -61.3 NC_001806.1 + 93254 0.66 0.629856
Target:  5'- aGCUcGCUGUGCgAGCAGcuCCGGGgCa -3'
miRNA:   3'- aCGGaCGACGCGgUCGUCc-GGUUCgG- -5'
5625 5' -61.3 NC_001806.1 + 1380 0.66 0.629856
Target:  5'- gGCCcccGCcGcCGCCAGCAcggugccgcugcGGCCcguGGCCg -3'
miRNA:   3'- aCGGa--CGaC-GCGGUCGU------------CCGGu--UCGG- -5'
5625 5' -61.3 NC_001806.1 + 31873 0.66 0.629856
Target:  5'- cGCCUGCccGC-CCGGacugaccuGGCCucuGGCCg -3'
miRNA:   3'- aCGGACGa-CGcGGUCgu------CCGGu--UCGG- -5'
5625 5' -61.3 NC_001806.1 + 77828 0.66 0.628848
Target:  5'- cGCUUugUGCGCCAccGCAGGCgAgauggggGGCCu -3'
miRNA:   3'- aCGGAcgACGCGGU--CGUCCGgU-------UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.