miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5626 5' -57 NC_001806.1 + 110000 0.66 0.863752
Target:  5'- aGUaGGCCCGGUUUCgGuCCGUUGUGa- -3'
miRNA:   3'- -CGaUUGGGUCGAGGgC-GGCAACGCaa -5'
5626 5' -57 NC_001806.1 + 35561 0.66 0.863752
Target:  5'- gGCgcGCCCGGCgCCgCGCCGaacgacgUGCGc- -3'
miRNA:   3'- -CGauUGGGUCGaGG-GCGGCa------ACGCaa -5'
5626 5' -57 NC_001806.1 + 4269 0.66 0.863752
Target:  5'- gGCg--UCCAGCUcgaCCCGCCGggGCu-- -3'
miRNA:   3'- -CGauuGGGUCGA---GGGCGGCaaCGcaa -5'
5626 5' -57 NC_001806.1 + 78932 0.66 0.840083
Target:  5'- cCUcGCCCGGggCCCGCCGUgucugGUGc- -3'
miRNA:   3'- cGAuUGGGUCgaGGGCGGCAa----CGCaa -5'
5626 5' -57 NC_001806.1 + 89181 0.67 0.820767
Target:  5'- gGUUGGCCCGGUcggcuucuguugcgUCCCGaCUGggGCGa- -3'
miRNA:   3'- -CGAUUGGGUCG--------------AGGGC-GGCaaCGCaa -5'
5626 5' -57 NC_001806.1 + 1310 0.67 0.796934
Target:  5'- cGCcuuCCCAGUccacaacuUCCCGCCGcggggGCGUg -3'
miRNA:   3'- -CGauuGGGUCG--------AGGGCGGCaa---CGCAa -5'
5626 5' -57 NC_001806.1 + 37675 0.68 0.769179
Target:  5'- cGCUGcgGCCaaAGCUCUCGCUGaUGCGg- -3'
miRNA:   3'- -CGAU--UGGg-UCGAGGGCGGCaACGCaa -5'
5626 5' -57 NC_001806.1 + 116957 0.68 0.759669
Target:  5'- cUUGGCCCuGGCUCCCGUgGUucggGUGUg -3'
miRNA:   3'- cGAUUGGG-UCGAGGGCGgCAa---CGCAa -5'
5626 5' -57 NC_001806.1 + 57379 0.68 0.759669
Target:  5'- --cGGCCCGGUggCUGUCGUUGCGg- -3'
miRNA:   3'- cgaUUGGGUCGagGGCGGCAACGCaa -5'
5626 5' -57 NC_001806.1 + 82528 0.69 0.710601
Target:  5'- gGCUuGCCCAG-UCCCGCCaugGCGc- -3'
miRNA:   3'- -CGAuUGGGUCgAGGGCGGcaaCGCaa -5'
5626 5' -57 NC_001806.1 + 59946 0.7 0.663945
Target:  5'- --aGACCCAGCUCUgccuuuuccaacaugCGCCGgcGCGg- -3'
miRNA:   3'- cgaUUGGGUCGAGG---------------GCGGCaaCGCaa -5'
5626 5' -57 NC_001806.1 + 150663 0.7 0.63933
Target:  5'- gGUUGGCCgGGC-CCCGCCGcgcugGCGg- -3'
miRNA:   3'- -CGAUUGGgUCGaGGGCGGCaa---CGCaa -5'
5626 5' -57 NC_001806.1 + 135601 0.7 0.608528
Target:  5'- uGCUGGCgCUccagGGCcCCCGCUGUUGCGc- -3'
miRNA:   3'- -CGAUUG-GG----UCGaGGGCGGCAACGCaa -5'
5626 5' -57 NC_001806.1 + 4039 0.71 0.544588
Target:  5'- uGCUGcgcggcgucGCCCAGCUCgggcgcccacacggCCGCCGggGCGc- -3'
miRNA:   3'- -CGAU---------UGGGUCGAG--------------GGCGGCaaCGCaa -5'
5626 5' -57 NC_001806.1 + 92668 0.72 0.537601
Target:  5'- aGCUucccGCCCGGCUCCUGUCGc-GCGa- -3'
miRNA:   3'- -CGAu---UGGGUCGAGGGCGGCaaCGCaa -5'
5626 5' -57 NC_001806.1 + 101445 1.07 0.002812
Target:  5'- cGCUAACCCAGCUCCCGCCGUUGCGUUc -3'
miRNA:   3'- -CGAUUGGGUCGAGGGCGGCAACGCAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.