Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5626 | 5' | -57 | NC_001806.1 | + | 101445 | 1.07 | 0.002812 |
Target: 5'- cGCUAACCCAGCUCCCGCCGUUGCGUUc -3' miRNA: 3'- -CGAUUGGGUCGAGGGCGGCAACGCAA- -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 35561 | 0.66 | 0.863752 |
Target: 5'- gGCgcGCCCGGCgCCgCGCCGaacgacgUGCGc- -3' miRNA: 3'- -CGauUGGGUCGaGG-GCGGCa------ACGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 4269 | 0.66 | 0.863752 |
Target: 5'- gGCg--UCCAGCUcgaCCCGCCGggGCu-- -3' miRNA: 3'- -CGauuGGGUCGA---GGGCGGCaaCGcaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 78932 | 0.66 | 0.840083 |
Target: 5'- cCUcGCCCGGggCCCGCCGUgucugGUGc- -3' miRNA: 3'- cGAuUGGGUCgaGGGCGGCAa----CGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 89181 | 0.67 | 0.820767 |
Target: 5'- gGUUGGCCCGGUcggcuucuguugcgUCCCGaCUGggGCGa- -3' miRNA: 3'- -CGAUUGGGUCG--------------AGGGC-GGCaaCGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 1310 | 0.67 | 0.796934 |
Target: 5'- cGCcuuCCCAGUccacaacuUCCCGCCGcggggGCGUg -3' miRNA: 3'- -CGauuGGGUCG--------AGGGCGGCaa---CGCAa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 37675 | 0.68 | 0.769179 |
Target: 5'- cGCUGcgGCCaaAGCUCUCGCUGaUGCGg- -3' miRNA: 3'- -CGAU--UGGg-UCGAGGGCGGCaACGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 116957 | 0.68 | 0.759669 |
Target: 5'- cUUGGCCCuGGCUCCCGUgGUucggGUGUg -3' miRNA: 3'- cGAUUGGG-UCGAGGGCGgCAa---CGCAa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 57379 | 0.68 | 0.759669 |
Target: 5'- --cGGCCCGGUggCUGUCGUUGCGg- -3' miRNA: 3'- cgaUUGGGUCGagGGCGGCAACGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 82528 | 0.69 | 0.710601 |
Target: 5'- gGCUuGCCCAG-UCCCGCCaugGCGc- -3' miRNA: 3'- -CGAuUGGGUCgAGGGCGGcaaCGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 59946 | 0.7 | 0.663945 |
Target: 5'- --aGACCCAGCUCUgccuuuuccaacaugCGCCGgcGCGg- -3' miRNA: 3'- cgaUUGGGUCGAGG---------------GCGGCaaCGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 150663 | 0.7 | 0.63933 |
Target: 5'- gGUUGGCCgGGC-CCCGCCGcgcugGCGg- -3' miRNA: 3'- -CGAUUGGgUCGaGGGCGGCaa---CGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 135601 | 0.7 | 0.608528 |
Target: 5'- uGCUGGCgCUccagGGCcCCCGCUGUUGCGc- -3' miRNA: 3'- -CGAUUG-GG----UCGaGGGCGGCAACGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 4039 | 0.71 | 0.544588 |
Target: 5'- uGCUGcgcggcgucGCCCAGCUCgggcgcccacacggCCGCCGggGCGc- -3' miRNA: 3'- -CGAU---------UGGGUCGAG--------------GGCGGCaaCGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 92668 | 0.72 | 0.537601 |
Target: 5'- aGCUucccGCCCGGCUCCUGUCGc-GCGa- -3' miRNA: 3'- -CGAu---UGGGUCGAGGGCGGCaaCGCaa -5' |
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5626 | 5' | -57 | NC_001806.1 | + | 110000 | 0.66 | 0.863752 |
Target: 5'- aGUaGGCCCGGUUUCgGuCCGUUGUGa- -3' miRNA: 3'- -CGaUUGGGUCGAGGgC-GGCAACGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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